Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8J entry

There are 4 chains in PDB entry 5K8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 79
B
 ALA 2TRP 128
C
 ALA 2TRP 128
D
 HIS -4ASP 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5K8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
B
6 16Right-handed alpha
Helix 3
AA3
B
17 27Right-handed alpha
Helix 4
AA4
B
35 46Right-handed alpha
Helix 5
AA5
B
48 66Right-handed alpha
Helix 6
AA6
B
72 87Right-handed alpha
Helix 7
AA7
B
92 105Right-handed alpha
Helix 8
AA8
B
113 118Right-handed 310
Helix 9
AA9
C
6 15Right-handed alpha
Helix 10
AB1
C
17 25Right-handed alpha
Helix 11
AB2
C
35 46Right-handed alpha
Helix 12
AB3
C
51 66Right-handed alpha
Helix 13
AB4
C
72 87Right-handed alpha
Helix 14
AB5
C
89 91Right-handed 310
Helix 15
AB6
C
92 106Right-handed alpha
Helix 16
AB7
C
113 118Right-handed 310
Helix 17
AB8
D
48 58Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5K8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 7first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
39 44anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
31 36anti-parallel
Strand 6
D
1 6anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
15 19anti-parallel
Strand 3
D
15 19anti-parallel
Strand 4
D
9 10anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
31 34parallel
Strand 3
B
3 5parallel
Strand 4
B
108 111parallel
Strand 5
B
125 127parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 69first strand
Strand 2
C
31 34parallel
Strand 3
C
3 5parallel
Strand 4
C
108 111parallel
Strand 5
C
124 127parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il