Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8K entry

There is 1 chain in PDB entry 5K8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5K8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
54 70Right-handed alpha
Helix 4
AA4
A
86 94Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
137 144Right-handed alpha
Helix 8
AA8
A
147 167Right-handed alpha
Helix 9
AA9
A
170 174Right-handed 310
Helix 10
AB1
A
176 188Right-handed alpha
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There are 2 sheets in PDB entry 5K8K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
73 77parallel
Strand 3
A
36 40parallel
Strand 4
A
3 7parallel
Strand 5
A
224 227anti-parallel
Strand 6
A
232 234anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
109 114anti-parallel
Strand 3
A
191 194parallel
Strand 4
A
209 212parallel
Strand 5
A
201 204anti-parallel
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