Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K8M entry

There are 4 chains in PDB entry 5K8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	PRO 425
B	ASN 5	PRO 425
C	ASP 6	PRO 425
D	VAL 7	PRO 425

There are 63 helices in PDB entry 5K8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	16	Right-handed alpha
Helix 2	AA2	A	17	31	Right-handed alpha
Helix 3	AA3	A	38	52	Right-handed alpha
Helix 4	AA4	A	119	124	Right-handed alpha
Helix 5	AA5	A	125	142	Right-handed alpha
Helix 6	AA6	A	168	172	Right-handed 310
Helix 7	AA7	A	174	177	Right-handed 310
Helix 8	AA8	A	178	185	Right-handed alpha
Helix 9	AA9	A	223	227	Right-handed 310
Helix 10	AB1	A	232	236	Right-handed 310
Helix 11	AB2	A	238	261	Right-handed alpha
Helix 12	AB3	A	307	321	Right-handed alpha
Helix 13	AB4	A	342	358	Right-handed alpha
Helix 14	AB5	A	366	370	Right-handed 310
Helix 15	AB6	A	374	381	Right-handed alpha
Helix 16	AB7	A	403	421	Right-handed alpha
Helix 17	AB8	B	6	16	Right-handed alpha
Helix 18	AB9	B	17	31	Right-handed alpha
Helix 19	AC1	B	38	52	Right-handed alpha
Helix 20	AC2	B	119	124	Right-handed alpha
Helix 21	AC3	B	125	142	Right-handed alpha
Helix 22	AC4	B	174	177	Right-handed 310
Helix 23	AC5	B	178	185	Right-handed alpha
Helix 24	AC6	B	223	227	Right-handed 310
Helix 25	AC7	B	232	236	Right-handed 310
Helix 26	AC8	B	238	261	Right-handed alpha
Helix 27	AC9	B	307	322	Right-handed alpha
Helix 28	AD1	B	342	358	Right-handed alpha
Helix 29	AD2	B	366	370	Right-handed 310
Helix 30	AD3	B	374	381	Right-handed alpha
Helix 31	AD4	B	403	421	Right-handed alpha
Helix 32	AD5	C	7	16	Right-handed alpha
Helix 33	AD6	C	17	31	Right-handed alpha
Helix 34	AD7	C	38	52	Right-handed alpha
Helix 35	AD8	C	119	124	Right-handed alpha
Helix 36	AD9	C	125	142	Right-handed alpha
Helix 37	AE1	C	168	172	Right-handed 310
Helix 38	AE2	C	174	177	Right-handed 310
Helix 39	AE3	C	178	185	Right-handed alpha
Helix 40	AE4	C	223	227	Right-handed 310
Helix 41	AE5	C	232	236	Right-handed 310
Helix 42	AE6	C	238	261	Right-handed alpha
Helix 43	AE7	C	307	321	Right-handed alpha
Helix 44	AE8	C	342	358	Right-handed alpha
Helix 45	AE9	C	366	370	Right-handed 310
Helix 46	AF1	C	374	381	Right-handed alpha
Helix 47	AF2	C	403	421	Right-handed alpha
Helix 48	AF3	D	8	16	Right-handed alpha
Helix 49	AF4	D	17	31	Right-handed alpha
Helix 50	AF5	D	38	52	Right-handed alpha
Helix 51	AF6	D	119	124	Right-handed alpha
Helix 52	AF7	D	125	142	Right-handed alpha
Helix 53	AF8	D	168	172	Right-handed 310
Helix 54	AF9	D	174	177	Right-handed 310
Helix 55	AG1	D	178	185	Right-handed alpha
Helix 56	AG2	D	223	227	Right-handed 310
Helix 57	AG3	D	232	236	Right-handed 310
Helix 58	AG4	D	238	261	Right-handed alpha
Helix 59	AG5	D	307	322	Right-handed alpha
Helix 60	AG6	D	342	358	Right-handed alpha
Helix 61	AG7	D	366	370	Right-handed 310
Helix 62	AG8	D	374	381	Right-handed alpha
Helix 63	AG9	D	403	421	Right-handed alpha

There are 16 sheets in PDB entry 5K8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	81	86	parallel
Strand 5	A	191	194	parallel
Strand 6	A	385	387	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	116	118	anti-parallel
Strand 3	A	400	402	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	280	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	208	217	anti-parallel
Strand 4	A	326	334	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	265	first strand
Strand 2	A	268	270	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	81	86	parallel
Strand 5	B	191	194	parallel
Strand 6	B	385	387	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	116	118	anti-parallel
Strand 3	B	400	402	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	B	293	302	anti-parallel
Strand 3	B	208	217	anti-parallel
Strand 4	B	326	334	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	268	270	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	62	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	81	86	parallel
Strand 5	C	191	194	parallel
Strand 6	C	385	387	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	116	118	anti-parallel
Strand 3	C	400	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	281	first strand
Strand 2	C	293	302	anti-parallel
Strand 3	C	208	217	anti-parallel
Strand 4	C	326	334	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	265	first strand
Strand 2	C	268	270	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	65	72	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	81	86	parallel
Strand 5	D	191	194	parallel
Strand 6	D	385	387	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	112	first strand
Strand 2	D	116	118	anti-parallel
Strand 3	D	400	402	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	281	first strand
Strand 2	D	293	302	anti-parallel
Strand 3	D	208	217	anti-parallel
Strand 4	D	326	334	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	268	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8M