Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K8P entry

There are 8 chains in PDB entry 5K8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	PRO 425
B	ASN 5	PRO 425
C	SER 4	PRO 425
D	MET 1	PRO 425
E	GLY 3	PRO 425
F	MET 1	PRO 425
G	ASN 5	PRO 425
H	SER 4	PRO 425

There are132 helices in PDB entry 5K8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	17	31	Right-handed alpha
Helix 3	AA3	A	38	52	Right-handed alpha
Helix 4	AA4	A	94	98	Right-handed 310
Helix 5	AA5	A	104	109	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed alpha
Helix 7	AA7	A	125	142	Right-handed alpha
Helix 8	AA8	A	174	177	Right-handed 310
Helix 9	AA9	A	178	185	Right-handed alpha
Helix 10	AB1	A	223	227	Right-handed 310
Helix 11	AB2	A	232	236	Right-handed 310
Helix 12	AB3	A	238	261	Right-handed alpha
Helix 13	AB4	A	307	322	Right-handed alpha
Helix 14	AB5	A	342	358	Right-handed alpha
Helix 15	AB6	A	366	370	Right-handed 310
Helix 16	AB7	A	374	381	Right-handed alpha
Helix 17	AB8	A	403	421	Right-handed alpha
Helix 18	AB9	B	6	16	Right-handed alpha
Helix 19	AC1	B	17	31	Right-handed alpha
Helix 20	AC2	B	38	52	Right-handed alpha
Helix 21	AC3	B	104	109	Right-handed alpha
Helix 22	AC4	B	119	124	Right-handed alpha
Helix 23	AC5	B	125	142	Right-handed alpha
Helix 24	AC6	B	168	172	Right-handed 310
Helix 25	AC7	B	174	177	Right-handed 310
Helix 26	AC8	B	178	185	Right-handed alpha
Helix 27	AC9	B	223	227	Right-handed 310
Helix 28	AD1	B	232	236	Right-handed 310
Helix 29	AD2	B	238	261	Right-handed alpha
Helix 30	AD3	B	307	322	Right-handed alpha
Helix 31	AD4	B	342	357	Right-handed alpha
Helix 32	AD5	B	366	370	Right-handed 310
Helix 33	AD6	B	374	381	Right-handed alpha
Helix 34	AD7	B	403	421	Right-handed alpha
Helix 35	AD8	C	5	16	Right-handed alpha
Helix 36	AD9	C	17	30	Right-handed alpha
Helix 37	AE1	C	38	52	Right-handed alpha
Helix 38	AE2	C	104	108	Right-handed 310
Helix 39	AE3	C	119	124	Right-handed alpha
Helix 40	AE4	C	125	143	Right-handed alpha
Helix 41	AE5	C	174	177	Right-handed 310
Helix 42	AE6	C	178	185	Right-handed alpha
Helix 43	AE7	C	223	227	Right-handed 310
Helix 44	AE8	C	232	236	Right-handed 310
Helix 45	AE9	C	238	261	Right-handed alpha
Helix 46	AF1	C	307	322	Right-handed alpha
Helix 47	AF2	C	342	358	Right-handed alpha
Helix 48	AF3	C	366	370	Right-handed 310
Helix 49	AF4	C	374	381	Right-handed alpha
Helix 50	AF5	C	403	421	Right-handed alpha
Helix 51	AF6	D	5	16	Right-handed alpha
Helix 52	AF7	D	17	31	Right-handed alpha
Helix 53	AF8	D	38	52	Right-handed alpha
Helix 54	AF9	D	104	109	Right-handed alpha
Helix 55	AG1	D	119	124	Right-handed alpha
Helix 56	AG2	D	125	143	Right-handed alpha
Helix 57	AG3	D	174	177	Right-handed 310
Helix 58	AG4	D	178	185	Right-handed alpha
Helix 59	AG5	D	223	227	Right-handed 310
Helix 60	AG6	D	232	236	Right-handed 310
Helix 61	AG7	D	238	261	Right-handed alpha
Helix 62	AG8	D	307	322	Right-handed alpha
Helix 63	AG9	D	342	358	Right-handed alpha
Helix 64	AH1	D	366	370	Right-handed 310
Helix 65	AH2	D	374	381	Right-handed alpha
Helix 66	AH3	D	393	397	Right-handed 310
Helix 67	AH4	D	403	421	Right-handed alpha
Helix 68	AH5	E	4	16	Right-handed alpha
Helix 69	AH6	E	17	31	Right-handed alpha
Helix 70	AH7	E	38	52	Right-handed alpha
Helix 71	AH8	E	104	109	Right-handed alpha
Helix 72	AH9	E	119	124	Right-handed alpha
Helix 73	AI1	E	125	142	Right-handed alpha
Helix 74	AI2	E	174	177	Right-handed 310
Helix 75	AI3	E	178	185	Right-handed alpha
Helix 76	AI4	E	223	227	Right-handed 310
Helix 77	AI5	E	232	236	Right-handed 310
Helix 78	AI6	E	238	261	Right-handed alpha
Helix 79	AI7	E	307	322	Right-handed alpha
Helix 80	AI8	E	342	358	Right-handed alpha
Helix 81	AI9	E	366	370	Right-handed 310
Helix 82	AJ1	E	374	381	Right-handed alpha
Helix 83	AJ2	E	403	421	Right-handed alpha
Helix 84	AJ3	F	3	16	Right-handed alpha
Helix 85	AJ4	F	17	31	Right-handed alpha
Helix 86	AJ5	F	38	52	Right-handed alpha
Helix 87	AJ6	F	104	108	Right-handed 310
Helix 88	AJ7	F	119	124	Right-handed alpha
Helix 89	AJ8	F	125	142	Right-handed alpha
Helix 90	AJ9	F	174	177	Right-handed 310
Helix 91	AK1	F	178	185	Right-handed alpha
Helix 92	AK2	F	223	227	Right-handed 310
Helix 93	AK3	F	232	236	Right-handed 310
Helix 94	AK4	F	238	261	Right-handed alpha
Helix 95	AK5	F	307	322	Right-handed alpha
Helix 96	AK6	F	342	358	Right-handed alpha
Helix 97	AK7	F	366	370	Right-handed 310
Helix 98	AK8	F	374	381	Right-handed alpha
Helix 99	AK9	F	403	421	Right-handed alpha
Helix 100	AL1	G	6	16	Right-handed alpha
Helix 101	AL2	G	17	31	Right-handed alpha
Helix 102	AL3	G	38	52	Right-handed alpha
Helix 103	AL4	G	104	109	Right-handed alpha
Helix 104	AL5	G	119	124	Right-handed alpha
Helix 105	AL6	G	125	142	Right-handed alpha
Helix 106	AL7	G	174	177	Right-handed 310
Helix 107	AL8	G	178	185	Right-handed alpha
Helix 108	AL9	G	223	227	Right-handed 310
Helix 109	AM1	G	232	236	Right-handed 310
Helix 110	AM2	G	238	261	Right-handed alpha
Helix 111	AM3	G	307	322	Right-handed alpha
Helix 112	AM4	G	342	358	Right-handed alpha
Helix 113	AM5	G	366	370	Right-handed 310
Helix 114	AM6	G	374	381	Right-handed alpha
Helix 115	AM7	G	403	421	Right-handed alpha
Helix 116	AM8	H	5	15	Right-handed alpha
Helix 117	AM9	H	17	30	Right-handed alpha
Helix 118	AN1	H	38	52	Right-handed alpha
Helix 119	AN2	H	94	98	Right-handed 310
Helix 120	AN3	H	104	109	Right-handed alpha
Helix 121	AN4	H	119	124	Right-handed alpha
Helix 122	AN5	H	125	142	Right-handed alpha
Helix 123	AN6	H	174	177	Right-handed 310
Helix 124	AN7	H	178	185	Right-handed alpha
Helix 125	AN8	H	223	227	Right-handed 310
Helix 126	AN9	H	232	236	Right-handed 310
Helix 127	AO1	H	238	261	Right-handed alpha
Helix 128	AO2	H	307	322	Right-handed alpha
Helix 129	AO3	H	342	358	Right-handed alpha
Helix 130	AO4	H	366	370	Right-handed 310
Helix 131	AO5	H	374	381	Right-handed alpha
Helix 132	AO6	H	403	421	Right-handed alpha

There are 28 sheets in PDB entry 5K8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	81	86	parallel
Strand 5	A	191	194	parallel
Strand 6	A	385	387	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	116	118	anti-parallel
Strand 3	A	400	402	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	334	first strand
Strand 2	A	208	217	anti-parallel
Strand 3	A	293	302	anti-parallel
Strand 4	A	274	281	anti-parallel
Strand 5	B	274	281	anti-parallel
Strand 6	B	293	302	anti-parallel
Strand 7	B	208	217	anti-parallel
Strand 8	B	326	334	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	265	first strand
Strand 2	A	268	270	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	81	86	parallel
Strand 5	B	191	194	parallel
Strand 6	B	385	387	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	116	118	anti-parallel
Strand 3	B	400	402	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	268	270	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	62	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	81	86	parallel
Strand 5	C	191	194	parallel
Strand 6	C	385	387	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	116	118	anti-parallel
Strand 3	C	400	402	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	334	first strand
Strand 2	C	208	217	anti-parallel
Strand 3	C	293	302	anti-parallel
Strand 4	C	274	281	anti-parallel
Strand 5	F	274	281	anti-parallel
Strand 6	F	293	302	anti-parallel
Strand 7	F	208	217	anti-parallel
Strand 8	F	326	334	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	265	first strand
Strand 2	C	268	270	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	65	72	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	81	86	parallel
Strand 5	D	191	194	parallel
Strand 6	D	385	387	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	116	118	anti-parallel
Strand 3	D	400	402	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	334	first strand
Strand 2	D	208	217	anti-parallel
Strand 3	D	293	302	anti-parallel
Strand 4	D	274	281	anti-parallel
Strand 5	E	274	281	anti-parallel
Strand 6	E	293	302	anti-parallel
Strand 7	E	208	217	anti-parallel
Strand 8	E	326	334	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	268	270	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	62	first strand
Strand 2	E	65	72	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	81	86	parallel
Strand 5	E	191	194	parallel
Strand 6	E	385	387	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	116	118	anti-parallel
Strand 3	E	400	402	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	265	first strand
Strand 2	E	268	270	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	65	72	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	81	86	parallel
Strand 5	F	191	194	parallel
Strand 6	F	385	387	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	113	first strand
Strand 2	F	116	118	anti-parallel
Strand 3	F	400	402	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	265	first strand
Strand 2	F	268	270	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	62	first strand
Strand 2	G	65	72	anti-parallel
Strand 3	G	150	155	anti-parallel
Strand 4	G	81	86	parallel
Strand 5	G	191	194	parallel
Strand 6	G	385	387	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	112	first strand
Strand 2	G	116	118	anti-parallel
Strand 3	G	400	402	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	326	334	first strand
Strand 2	G	208	217	anti-parallel
Strand 3	G	293	302	anti-parallel
Strand 4	G	274	281	anti-parallel
Strand 5	H	274	281	anti-parallel
Strand 6	H	293	302	anti-parallel
Strand 7	H	208	217	anti-parallel
Strand 8	H	326	334	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	265	first strand
Strand 2	G	268	270	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	62	first strand
Strand 2	H	65	72	anti-parallel
Strand 3	H	150	155	anti-parallel
Strand 4	H	81	86	parallel
Strand 5	H	191	194	parallel
Strand 6	H	385	387	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	113	first strand
Strand 2	H	116	118	anti-parallel
Strand 3	H	400	402	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	265	first strand
Strand 2	H	268	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8P