Analysis of interatomic Contacts of Structural Units in PDB entry:
5K8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K8S entry

There are 2 chains in PDB entry 5K8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 294ASP 439
B
 GLY 294ASN 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5K8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
296 308Right-handed alpha
Helix 2
AA2
A
309 314Right-handed 310
Helix 3
AA3
A
317 326Right-handed alpha
Helix 4
AA4
A
377 383Right-handed alpha
Helix 5
AA5
A
403 410Right-handed alpha
Helix 6
AA6
A
413 424Right-handed alpha
Helix 7
AA7
A
424 431Right-handed alpha
Helix 8
AA8
B
296 308Right-handed alpha
Helix 9
AA9
B
317 326Right-handed alpha
Helix 10
AB1
B
377 383Right-handed alpha
Helix 11
AB2
B
403 410Right-handed alpha
Helix 12
AB3
B
413 431Right-handed alpha
Helix 13
AB4
B
435 439Right-handed 310
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There are 4 sheets in PDB entry 5K8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
348 354anti-parallel
Strand 4
A
374 375anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
389 392anti-parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
364 369anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 333first strand
Strand 2
B
396 402anti-parallel
Strand 3
B
348 354anti-parallel
Strand 4
B
374 375anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
389 392anti-parallel
Strand 3
B
357 361anti-parallel
Strand 4
B
364 369anti-parallel
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