Analysis of interatomic Contacts of Structural Units in PDB entry:
5K94

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K94 entry

There are 2 chains in PDB entry 5K94 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	LYS 1370
B	LYS 1	LYS 1370

There are 48 helices in PDB entry 5K94. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	52	54	Right-handed 310
Helix 4	AA4	A	64	73	Right-handed alpha
Helix 5	AA5	A	82	87	Right-handed alpha
Helix 6	AA6	A	90	96	Right-handed alpha
Helix 7	AA7	A	131	141	Right-handed alpha
Helix 8	AA8	A	153	164	Right-handed alpha
Helix 9	AA9	A	231	241	Right-handed alpha
Helix 10	AB1	A	242	246	Right-handed 310
Helix 11	AB2	A	275	289	Right-handed alpha
Helix 12	AB3	A	300	302	Right-handed 310
Helix 13	AB4	A	303	319	Right-handed alpha
Helix 14	AB5	A	352	362	Right-handed alpha
Helix 15	AB6	A	1185	1201	Right-handed alpha
Helix 16	AB7	A	1209	1219	Right-handed alpha
Helix 17	AB8	A	1228	1230	Right-handed 310
Helix 18	AB9	A	1231	1239	Right-handed alpha
Helix 19	AC1	A	1272	1283	Right-handed alpha
Helix 20	AC2	A	1286	1297	Right-handed alpha
Helix 21	AC3	A	1304	1312	Right-handed alpha
Helix 22	AC4	A	1314	1327	Right-handed alpha
Helix 23	AC5	A	1335	1352	Right-handed alpha
Helix 24	AC6	A	1356	1370	Right-handed alpha
Helix 25	AC7	B	16	32	Right-handed alpha
Helix 26	AC8	B	42	52	Right-handed alpha
Helix 27	AC9	B	64	73	Right-handed alpha
Helix 28	AD1	B	82	87	Right-handed alpha
Helix 29	AD2	B	90	97	Right-handed alpha
Helix 30	AD3	B	128	130	Right-handed 310
Helix 31	AD4	B	131	141	Right-handed alpha
Helix 32	AD5	B	153	164	Right-handed alpha
Helix 33	AD6	B	234	241	Right-handed alpha
Helix 34	AD7	B	242	246	Right-handed 310
Helix 35	AD8	B	275	289	Right-handed alpha
Helix 36	AD9	B	300	302	Right-handed 310
Helix 37	AE1	B	303	319	Right-handed alpha
Helix 38	AE2	B	352	362	Right-handed alpha
Helix 39	AE3	B	1185	1201	Right-handed alpha
Helix 40	AE4	B	1209	1219	Right-handed alpha
Helix 41	AE5	B	1228	1230	Right-handed 310
Helix 42	AE6	B	1231	1239	Right-handed alpha
Helix 43	AE7	B	1272	1283	Right-handed alpha
Helix 44	AE8	B	1286	1297	Right-handed alpha
Helix 45	AE9	B	1304	1312	Right-handed alpha
Helix 46	AF1	B	1314	1327	Right-handed alpha
Helix 47	AF2	B	1335	1352	Right-handed alpha
Helix 48	AF3	B	1356	1369	Right-handed alpha

There are 14 sheets in PDB entry 5K94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	1258	1266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	1301	1302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	1258	1266	anti-parallel
Strand 5	A	1328	1329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	1222	1227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	1242	1245	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	263	266	parallel
Strand 3	A	271	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	332	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1249	1250	first strand
Strand 2	A	1253	1254	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	1258	1266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	1301	1302	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	1258	1266	anti-parallel
Strand 5	B	1328	1329	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	1222	1227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	1242	1245	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	229	first strand
Strand 2	B	368	1182	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	266	first strand
Strand 2	B	271	274	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	332	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K94

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K94