Analysis of interatomic Contacts of Structural Units in PDB entry:
5K98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5K98 entry

There are 6 chains in PDB entry 5K98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	TYR 437
B	PHE 4	LYS 74
T	T 697	G 719
D	PRO 2	TYR 437
P	PHE 4	LYS 74
E	C 700	A 722

There are 45 helices in PDB entry 5K98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	34	Right-handed alpha
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	68	79	Right-handed alpha
Helix 4	AA4	A	85	94	Right-handed alpha
Helix 5	AA5	A	121	132	Right-handed alpha
Helix 6	AA6	A	198	213	Right-handed alpha
Helix 7	AA7	A	255	259	Right-handed alpha
Helix 8	AA8	A	262	266	Right-handed 310
Helix 9	AA9	A	267	271	Right-handed 310
Helix 10	AB1	A	274	283	Right-handed alpha
Helix 11	AB2	A	287	305	Right-handed alpha
Helix 12	AB3	A	311	314	Right-handed 310
Helix 13	AB4	A	346	349	Right-handed 310
Helix 14	AB5	A	367	369	Right-handed 310
Helix 15	AB6	A	370	382	Right-handed alpha
Helix 16	AB7	A	384	397	Right-handed alpha
Helix 17	AB8	A	398	408	Right-handed alpha
Helix 18	AB9	A	415	435	Right-handed alpha
Helix 19	AC1	B	9	23	Right-handed alpha
Helix 20	AC2	B	27	36	Right-handed alpha
Helix 21	AC3	B	38	48	Right-handed alpha
Helix 22	AC4	B	53	64	Right-handed alpha
Helix 23	AC5	D	29	34	Right-handed alpha
Helix 24	AC6	D	55	63	Right-handed alpha
Helix 25	AC7	D	68	79	Right-handed alpha
Helix 26	AC8	D	85	94	Right-handed alpha
Helix 27	AC9	D	121	132	Right-handed alpha
Helix 28	AD1	D	198	213	Right-handed alpha
Helix 29	AD2	D	255	259	Right-handed alpha
Helix 30	AD3	D	262	266	Right-handed 310
Helix 31	AD4	D	267	271	Right-handed 310
Helix 32	AD5	D	274	283	Right-handed alpha
Helix 33	AD6	D	287	305	Right-handed alpha
Helix 34	AD7	D	311	314	Right-handed 310
Helix 35	AD8	D	321	323	Right-handed 310
Helix 36	AD9	D	346	349	Right-handed 310
Helix 37	AE1	D	367	369	Right-handed 310
Helix 38	AE2	D	370	381	Right-handed alpha
Helix 39	AE3	D	384	397	Right-handed alpha
Helix 40	AE4	D	398	408	Right-handed alpha
Helix 41	AE5	D	415	435	Right-handed alpha
Helix 42	AE6	P	9	23	Right-handed alpha
Helix 43	AE7	P	27	36	Right-handed alpha
Helix 44	AE8	P	38	48	Right-handed alpha
Helix 45	AE9	P	53	64	Right-handed alpha

There are 13 sheets in PDB entry 5K98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	24	28	anti-parallel
Strand 3	A	12	18	anti-parallel
Strand 4	A	4	8	anti-parallel
Strand 5	A	101	105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	166	170	anti-parallel
Strand 3	A	161	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	228	234	anti-parallel
Strand 3	A	220	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	247	249	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	324	327	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	357	first strand
Strand 2	A	362	365	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	72	first strand
Strand 2	P	66	72	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	28	first strand
Strand 2	D	12	18	anti-parallel
Strand 3	D	4	7	anti-parallel
Strand 4	D	102	105	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	149	150	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	228	234	anti-parallel
Strand 6	D	220	225	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	247	249	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	316	320	anti-parallel
Strand 3	D	324	327	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	357	first strand
Strand 2	D	362	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5K98

Analysis of interatomic Contacts of Structural Units in PDB entry:
5K98