Analysis of interatomic Contacts of Structural Units in PDB entry:
5K9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K9B entry

There is 1 chain in PDB entry 5K9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5K9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
40 46Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
73 82Right-handed alpha
Helix 6
AA6
A
107 120Right-handed alpha
Helix 7
AA7
A
156 158Right-handed 310
Helix 8
AA8
A
159 176Right-handed alpha
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There are 3 sheets in PDB entry 5K9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
3 7parallel
Strand 3
A
49 55parallel
Strand 4
A
90 96parallel
Strand 5
A
123 124parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
3 7parallel
Strand 3
A
49 55parallel
Strand 4
A
90 96parallel
Strand 5
A
149 151parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
145 146anti-parallel
Strand 3
A
141 142anti-parallel
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