Analysis of interatomic Contacts of Structural Units in PDB entry:
5K9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K9H entry

There is 1 chain in PDB entry 5K9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5K9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
54 65Right-handed alpha
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
96 101Right-handed 310
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
135 152Right-handed alpha
Helix 9
AA9
A
170 174Right-handed 310
Helix 10
AB1
A
187 199Right-handed alpha
Helix 11
AB2
A
239 246Right-handed alpha
Helix 12
AB3
A
269 276Right-handed 310
Helix 13
AB4
A
278 288Right-handed alpha
Helix 14
AB5
A
289 293Right-handed 310
Helix 15
AB6
A
309 327Right-handed alpha
Helix 16
AB7
A
363 366Right-handed 310
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There are 6 sheets in PDB entry 5K9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
158 161parallel
Strand 3
A
118 123parallel
Strand 4
A
69 75parallel
Strand 5
A
22 26parallel
Strand 6
A
295 299parallel
Strand 7
A
256 261parallel
Strand 8
A
215 216parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
252 253anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
343 361anti-parallel
Strand 3
A
403 422anti-parallel
Strand 4
A
369 378anti-parallel
Strand 5
A
381 385anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
343 361anti-parallel
Strand 3
A
428 434anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
463 480anti-parallel
Strand 3
A
522 537anti-parallel
Strand 4
A
494 498anti-parallel
Strand 5
A
505 506anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
463 480anti-parallel
Strand 3
A
551 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il