Analysis of interatomic Contacts of Structural Units in PDB entry:
5K9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K9M entry

There is 1 chain in PDB entry 5K9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33PRO 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5K9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 51Right-handed alpha
Helix 2
AA2
A
53 69Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
120 140Right-handed alpha
Helix 6
AA6
A
143 154Right-handed alpha
Helix 7
AA7
A
184 190Right-handed 310
Helix 8
AA8
A
191 203Right-handed alpha
Helix 9
AA9
A
207 212Right-handed alpha
Helix 10
AB1
A
243 250Right-handed alpha
Helix 11
AB2
A
258 271Right-handed alpha
Helix 12
AB3
A
314 318Right-handed 310
Helix 13
AB4
A
321 336Right-handed alpha
Helix 14
AB5
A
339 351Right-handed alpha
Helix 15
AB6
A
354 358Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5K9M.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
217 225anti-parallel
Strand 6
A
233 239anti-parallel
Strand 7
A
292 298anti-parallel
Strand 8
A
308 313anti-parallel
Strand 9
A
362 370anti-parallel
Strand 10
A
376 382anti-parallel
Strand 11
A
93 99anti-parallel
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