Analysis of interatomic Contacts of Structural Units in PDB entry:
5K9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5K9T entry

There is 1 chain in PDB entry 5K9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15MET 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5K9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 38Right-handed alpha
Helix 2
AA2
A
39 56Right-handed alpha
Helix 3
AA3
A
59 62Right-handed 310
Helix 4
AA4
A
63 80Right-handed alpha
Helix 5
AA5
A
84 96Right-handed alpha
Helix 6
AA6
A
107 112Right-handed alpha
Helix 7
AA7
A
112 121Right-handed alpha
Helix 8
AA8
A
132 150Right-handed alpha
Helix 9
AA9
A
162 172Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
194 198Right-handed 310
Helix 12
AB3
A
210 216Right-handed alpha
Helix 13
AB4
A
232 241Right-handed alpha
Helix 14
AB5
A
242 246Right-handed 310
Helix 15
AB6
A
275 290Right-handed alpha
Helix 16
AB7
A
304 319Right-handed alpha
Helix 17
AB8
A
352 362Right-handed alpha
Helix 18
AB9
A
377 382Right-handed alpha
Helix 19
AC1
A
394 396Right-handed 310
Helix 20
AC2
A
397 406Right-handed alpha
Helix 21
AC3
A
430 448Right-handed alpha
Helix 22
AC4
A
458 472Right-handed alpha
Helix 23
AC5
A
483 492Right-handed alpha
Helix 24
AC6
A
518 526Right-handed alpha
Helix 25
AC7
A
530 551Right-handed alpha
Helix 26
AC8
A
564 573Right-handed alpha
Helix 27
AC9
A
574 575Right-handed 310
Helix 28
AD1
A
576 580Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5K9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
174 178parallel
Strand 3
A
127 130parallel
Strand 4
A
205 208parallel
Strand 5
A
386 391parallel
Strand 6
A
98 101parallel
Strand 7
A
408 411parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
370 376anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
582 589parallel
Strand 3
A
426 428parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
582 589parallel
Strand 3
A
554 558parallel
Strand 4
A
452 456parallel
Strand 5
A
500 504parallel
Strand 6
A
477 479parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il