Analysis of interatomic Contacts of Structural Units in PDB entry:
5KAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KAP entry

There are 2 chains in PDB entry 5KAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11TYR 192
B
 TYR 7LYS 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5KAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
119 131Right-handed alpha
Helix 4
AA4
A
146 149Right-handed 310
Helix 5
AA5
A
188 192Right-handed 310
Helix 6
AA6
B
16 35Right-handed alpha
Helix 7
AA7
B
36 39Right-handed 310
Helix 8
AA8
B
55 70Right-handed alpha
Helix 9
AA9
B
119 131Right-handed alpha
Helix 10
AB1
B
146 149Right-handed 310
Helix 11
AB2
B
188 195Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5KAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
184 186anti-parallel
Strand 3
A
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
48 52parallel
Strand 3
A
108 116parallel
Strand 4
A
136 144parallel
Strand 5
A
157 161parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
184 187anti-parallel
Strand 3
B
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 79first strand
Strand 2
B
47 52parallel
Strand 3
B
108 116parallel
Strand 4
B
136 144parallel
Strand 5
B
157 161parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il