Analysis of interatomic Contacts of Structural Units in PDB entry:
5KAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KAR entry

There is 1 chain in PDB entry 5KAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20GLY 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5KAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed 310
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
99 103Right-handed 310
Helix 4
AA4
A
104 123Right-handed alpha
Helix 5
AA5
A
148 159Right-handed alpha
Helix 6
AA6
A
160 162Right-handed 310
Helix 7
AA7
A
163 174Right-handed alpha
Helix 8
AA8
A
193 198Right-handed 310
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
209 211Right-handed 310
Helix 11
AB2
A
212 228Right-handed alpha
Helix 12
AB3
A
252 267Right-handed alpha
Helix 13
AB4
A
343 348Right-handed alpha
Helix 14
AB5
A
361 366Right-handed alpha
Helix 15
AB6
A
371 385Right-handed alpha
Helix 16
AB7
A
385 397Right-handed alpha
Helix 17
AB8
A
406 419Right-handed alpha
Helix 18
AB9
A
421 430Right-handed alpha
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There are 2 sheets in PDB entry 5KAR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
87 90parallel
Strand 3
A
21 26parallel
Strand 4
A
321 327anti-parallel
Strand 5
A
334 341anti-parallel
Strand 6
A
356 360anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
230 234parallel
Strand 4
A
270 275parallel
Strand 5
A
293 299parallel
Strand 6
A
282 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il