Analysis of interatomic Contacts of Structural Units in PDB entry:
5KB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KB5 entry

There is 1 chain in PDB entry 5KB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20PHE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5KB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 47Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
61 72Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
109 122Right-handed alpha
Helix 6
AA6
A
154 160Right-handed 310
Helix 7
AA7
A
161 165Right-handed 310
Helix 8
AA8
A
168 178Right-handed alpha
Helix 9
AA9
A
186 190Right-handed 310
Helix 10
AB1
A
191 205Right-handed alpha
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
222 230Right-handed alpha
Helix 13
AB4
A
231 233Right-handed 310
Helix 14
AB5
A
240 250Right-handed alpha
Helix 15
AB6
A
256 266Right-handed alpha
Helix 16
AB7
A
304 308Right-handed 310
Helix 17
AB8
A
313 327Right-handed alpha
Helix 18
AB9
A
331 347Right-handed alpha
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There are 2 sheets in PDB entry 5KB5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 131first strand
Strand 2
A
100 107parallel
Strand 3
A
25 28parallel
Strand 4
A
180 184parallel
Strand 5
A
208 212parallel
Strand 6
A
235 239parallel
Strand 7
A
277 282parallel
Strand 8
A
285 291anti-parallel
Strand 9
A
294 298anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
147 153parallel
Strand 3
A
137 144anti-parallel
Strand 4
A
32 38parallel
Strand 5
A
75 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il