Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBC entry

There are 2 chains in PDB entry 5KBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ILE 203
B
 ALA 3ILE 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5KBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 56Right-handed alpha
Helix 2
AA2
A
75 87Right-handed alpha
Helix 3
AA3
A
94 107Right-handed alpha
Helix 4
AA4
A
112 116Right-handed 310
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
138 149Right-handed alpha
Helix 7
AA7
A
151 167Right-handed alpha
Helix 8
AA8
A
186 201Right-handed alpha
Helix 9
AA9
B
14 18Right-handed 310
Helix 10
AB1
B
40 48Right-handed alpha
Helix 11
AB2
B
48 57Right-handed alpha
Helix 12
AB3
B
75 87Right-handed alpha
Helix 13
AB4
B
94 107Right-handed alpha
Helix 14
AB5
B
118 126Right-handed alpha
Helix 15
AB6
B
138 149Right-handed alpha
Helix 16
AB7
B
151 167Right-handed alpha
Helix 17
AB8
B
186 202Right-handed alpha
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There are 2 sheets in PDB entry 5KBC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
B
180 183anti-parallel
Strand 3
B
174 177anti-parallel
Strand 4
B
28 34anti-parallel
Strand 5
B
62 68parallel
Strand 6
B
20 22anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
28 34parallel
Strand 4
A
174 177anti-parallel
Strand 5
A
180 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il