Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBE entry

There are 2 chains in PDB entry 5KBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15LEU 225
B
 LEU 14LEU 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5KBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
48 89Right-handed alpha
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
137 148Right-handed alpha
Helix 7
AA7
A
155 171Right-handed alpha
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
214 223Right-handed alpha
Helix 11
AB2
B
17 19Right-handed 310
Helix 12
AB3
B
20 26Right-handed alpha
Helix 13
AB4
B
31 34Right-handed 310
Helix 14
AB5
B
48 63Right-handed alpha
Helix 15
AB6
B
63 87Right-handed alpha
Helix 16
AB7
B
94 100Right-handed alpha
Helix 17
AB8
B
100 109Right-handed alpha
Helix 18
AB9
B
137 148Right-handed alpha
Helix 19
AC1
B
155 170Right-handed alpha
Helix 20
AC2
B
181 185Right-handed 310
Helix 21
AC3
B
197 199Right-handed 310
Helix 22
AC4
B
208 220Right-handed alpha
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There are 3 sheets in PDB entry 5KBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
B
41 47anti-parallel
Strand 5
B
35 38anti-parallel
Strand 6
B
27 30anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 122first strand
Strand 2
A
127 135anti-parallel
Strand 3
A
189 195anti-parallel
Strand 4
A
174 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 122first strand
Strand 2
B
127 135anti-parallel
Strand 3
B
189 195anti-parallel
Strand 4
B
174 180anti-parallel
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