Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBH entry

There are 2 chains in PDB entry 5KBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ASN 226
B
 GLN 16LEU 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
63 89Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
155 170Right-handed alpha
Helix 9
AA9
A
181 185Right-handed 310
Helix 10
AB1
A
197 199Right-handed 310
Helix 11
AB2
A
214 225Right-handed alpha
Helix 12
AB3
B
20 25Right-handed alpha
Helix 13
AB4
B
31 34Right-handed 310
Helix 14
AB5
B
48 63Right-handed alpha
Helix 15
AB6
B
63 87Right-handed alpha
Helix 16
AB7
B
88 90Right-handed 310
Helix 17
AB8
B
94 100Right-handed alpha
Helix 18
AB9
B
100 109Right-handed alpha
Helix 19
AC1
B
137 148Right-handed alpha
Helix 20
AC2
B
155 170Right-handed alpha
Helix 21
AC3
B
181 185Right-handed 310
Helix 22
AC4
B
197 199Right-handed 310
Helix 23
AC5
B
208 218Right-handed alpha
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There are 3 sheets in PDB entry 5KBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
B
41 47anti-parallel
Strand 5
B
35 38anti-parallel
Strand 6
B
27 30anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 122first strand
Strand 2
A
127 135anti-parallel
Strand 3
A
189 195anti-parallel
Strand 4
A
174 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 122first strand
Strand 2
B
127 135anti-parallel
Strand 3
B
189 195anti-parallel
Strand 4
B
174 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il