Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KBJ entry

There are 10 chains in PDB entry 5KBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	TYR 133
B	GLN 4	TYR 133
C	GLN 4	TYR 133
H	GLN 4	VAL 130
D	GLN 4	TYR 133
E	GLN 4	TYR 133
F	GLN 4	TYR 133
G	GLN 2	VAL 130
R	C 2	T 33
W	A 3	G 34

There are 54 helices in PDB entry 5KBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	20	25	Right-handed 310
Helix 3	AA3	A	26	31	Right-handed alpha
Helix 4	AA4	A	33	53	Right-handed alpha
Helix 5	AA5	A	67	75	Right-handed alpha
Helix 6	AA6	A	78	91	Right-handed alpha
Helix 7	AA7	A	116	129	Right-handed alpha
Helix 8	AA8	B	7	13	Right-handed alpha
Helix 9	AA9	B	20	25	Right-handed 310
Helix 10	AB1	B	26	30	Right-handed 310
Helix 11	AB2	B	35	53	Right-handed alpha
Helix 12	AB3	B	67	75	Right-handed alpha
Helix 13	AB4	B	78	92	Right-handed alpha
Helix 14	AB5	B	116	128	Right-handed alpha
Helix 15	AB6	C	7	14	Right-handed alpha
Helix 16	AB7	C	21	26	Right-handed alpha
Helix 17	AB8	C	33	53	Right-handed alpha
Helix 18	AB9	C	67	76	Right-handed alpha
Helix 19	AC1	C	78	92	Right-handed alpha
Helix 20	AC2	C	116	128	Right-handed alpha
Helix 21	AC3	H	7	14	Right-handed alpha
Helix 22	AC4	H	22	25	Right-handed 310
Helix 23	AC5	H	26	31	Right-handed 310
Helix 24	AC6	H	33	46	Right-handed alpha
Helix 25	AC7	H	46	51	Right-handed alpha
Helix 26	AC8	H	67	75	Right-handed alpha
Helix 27	AC9	H	78	87	Right-handed alpha
Helix 28	AD1	H	116	126	Right-handed alpha
Helix 29	AD2	D	7	12	Right-handed alpha
Helix 30	AD3	D	21	26	Right-handed alpha
Helix 31	AD4	D	33	44	Right-handed alpha
Helix 32	AD5	D	46	53	Right-handed alpha
Helix 33	AD6	D	67	76	Right-handed alpha
Helix 34	AD7	D	78	92	Right-handed alpha
Helix 35	AD8	D	116	126	Right-handed alpha
Helix 36	AD9	E	7	14	Right-handed alpha
Helix 37	AE1	E	22	25	Right-handed 310
Helix 38	AE2	E	26	30	Right-handed 310
Helix 39	AE3	E	33	53	Right-handed alpha
Helix 40	AE4	E	67	75	Right-handed alpha
Helix 41	AE5	E	78	93	Right-handed alpha
Helix 42	AE6	E	116	128	Right-handed alpha
Helix 43	AE7	F	7	12	Right-handed alpha
Helix 44	AE8	F	33	46	Right-handed alpha
Helix 45	AE9	F	46	53	Right-handed alpha
Helix 46	AF1	F	67	76	Right-handed alpha
Helix 47	AF2	F	78	92	Right-handed alpha
Helix 48	AF3	F	116	127	Right-handed alpha
Helix 49	AF4	G	7	12	Right-handed alpha
Helix 50	AF5	G	22	24	Right-handed 310
Helix 51	AF6	G	33	53	Right-handed alpha
Helix 52	AF7	G	69	75	Right-handed alpha
Helix 53	AF8	G	80	89	Right-handed alpha
Helix 54	AF9	G	116	127	Right-handed alpha

There are 10 sheets in PDB entry 5KBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	107	110	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	107	110	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	H	16	20	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	95	97	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	107	110	anti-parallel
Strand 3	H	95	98	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	E	16	20	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	107	110	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	106	110	anti-parallel
Strand 3	E	95	98	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	G	16	20	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	107	110	anti-parallel
Strand 3	F	95	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBJ