Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBQ entry

There are 2 chains in PDB entry 5KBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 254LYS 542
B
 GLU 255LYS 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5KBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
254 259Right-handed alpha
Helix 2
AA2
A
265 269Right-handed alpha
Helix 3
AA3
A
302 306Right-handed 310
Helix 4
AA4
A
309 322Right-handed alpha
Helix 5
AA5
A
352 359Right-handed alpha
Helix 6
AA6
A
362 383Right-handed alpha
Helix 7
AA7
A
391 393Right-handed 310
Helix 8
AA8
A
427 431Right-handed 310
Helix 9
AA9
A
432 437Right-handed alpha
Helix 10
AB1
A
444 460Right-handed alpha
Helix 11
AB2
A
468 480Right-handed alpha
Helix 12
AB3
A
486 490Right-handed 310
Helix 13
AB4
A
491 502Right-handed alpha
Helix 14
AB5
A
511 516Right-handed alpha
Helix 15
AB6
A
517 524Right-handed 310
Helix 16
AB7
A
526 529Right-handed 310
Helix 17
AB8
A
530 541Right-handed alpha
Helix 18
AB9
B
255 260Right-handed 310
Helix 19
AC1
B
265 269Right-handed alpha
Helix 20
AC2
B
308 322Right-handed alpha
Helix 21
AC3
B
351 359Right-handed alpha
Helix 22
AC4
B
362 383Right-handed alpha
Helix 23
AC5
B
391 393Right-handed 310
Helix 24
AC6
B
432 437Right-handed alpha
Helix 25
AC7
B
443 460Right-handed alpha
Helix 26
AC8
B
468 479Right-handed alpha
Helix 27
AC9
B
491 502Right-handed alpha
Helix 28
AD1
B
511 516Right-handed alpha
Helix 29
AD2
B
517 524Right-handed 310
Helix 30
AD3
B
526 529Right-handed 310
Helix 31
AD4
B
530 541Right-handed alpha
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There are 5 sheets in PDB entry 5KBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 277first strand
Strand 2
A
283 289anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
340 345anti-parallel
Strand 5
A
330 335anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
412 413anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
295 302anti-parallel
Strand 4
B
339 345anti-parallel
Strand 5
B
330 336anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
403 405anti-parallel
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