Analysis of interatomic Contacts of Structural Units in PDB entry:
5KBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KBZ entry

There are 2 chains in PDB entry 5KBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1304THR 1636
B
 GLU 1305THR 1636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5KBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1338 1343Right-handed alpha
Helix 2
AA2
A
1354 1373Right-handed alpha
Helix 3
AA3
A
1420 1424Right-handed 310
Helix 4
AA4
A
1454 1463Right-handed alpha
Helix 5
AA5
A
1463 1480Right-handed alpha
Helix 6
AA6
A
1488 1496Right-handed alpha
Helix 7
AA7
A
1503 1506Right-handed 310
Helix 8
AA8
A
1515 1517Right-handed 310
Helix 9
AA9
A
1527 1529Right-handed 310
Helix 10
AB1
A
1538 1555Right-handed alpha
Helix 11
AB2
A
1627 1636Right-handed alpha
Helix 12
AB3
B
1338 1343Right-handed alpha
Helix 13
AB4
B
1354 1373Right-handed alpha
Helix 14
AB5
B
1420 1424Right-handed 310
Helix 15
AB6
B
1454 1463Right-handed alpha
Helix 16
AB7
B
1463 1480Right-handed alpha
Helix 17
AB8
B
1488 1496Right-handed alpha
Helix 18
AB9
B
1503 1506Right-handed 310
Helix 19
AC1
B
1515 1517Right-handed 310
Helix 20
AC2
B
1527 1529Right-handed 310
Helix 21
AC3
B
1538 1555Right-handed alpha
Helix 22
AC4
B
1627 1636Right-handed alpha
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There are 4 sheets in PDB entry 5KBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1313 1320first strand
Strand 2
A
1323 1332anti-parallel
Strand 3
A
1407 1415anti-parallel
Strand 4
A
1426 1434anti-parallel
Strand 5
A
1442 1452anti-parallel
Strand 6
A
1386 1394anti-parallel
Strand 7
A
1564 1576anti-parallel
Strand 8
A
1612 1626anti-parallel
Strand 9
A
1600 1609anti-parallel
Strand 10
A
1585 1591anti-parallel
Strand 11
A
1519 1525anti-parallel
Strand 12
A
1508 1514anti-parallel
Strand 13
A
1484 1487anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1350 1352first strand
Strand 2
A
1345 1347anti-parallel
Strand 3
A
1500 1501anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1314 1321first strand
Strand 2
B
1324 1332anti-parallel
Strand 3
B
1407 1415anti-parallel
Strand 4
B
1426 1434anti-parallel
Strand 5
B
1442 1452anti-parallel
Strand 6
B
1386 1394anti-parallel
Strand 7
B
1564 1576anti-parallel
Strand 8
B
1612 1626anti-parallel
Strand 9
B
1600 1609anti-parallel
Strand 10
B
1585 1591anti-parallel
Strand 11
B
1519 1525anti-parallel
Strand 12
B
1508 1514anti-parallel
Strand 13
B
1484 1487anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1350 1352first strand
Strand 2
B
1345 1347anti-parallel
Strand 3
B
1500 1501anti-parallel
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