Analysis of interatomic Contacts of Structural Units in PDB entry:
5KC2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KC2 entry

There are 2 chains in PDB entry 5KC2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN 4	THR 875
B	GLN 10	GLN 1454

There are 77 helices in PDB entry 5KC2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	43	49	Right-handed alpha
Helix 2	AA2	C	135	139	Right-handed 310
Helix 3	AA3	C	156	169	Right-handed alpha
Helix 4	AA4	C	175	180	Right-handed alpha
Helix 5	AA5	C	182	191	Right-handed alpha
Helix 6	AA6	C	192	194	Right-handed 310
Helix 7	AA7	C	277	288	Right-handed alpha
Helix 8	AA8	C	302	311	Right-handed alpha
Helix 9	AA9	C	320	329	Right-handed alpha
Helix 10	AB1	C	330	337	Right-handed alpha
Helix 11	AB2	C	340	347	Right-handed alpha
Helix 12	AB3	C	352	364	Right-handed alpha
Helix 13	AB4	C	372	376	Right-handed 310
Helix 14	AB5	C	384	395	Right-handed alpha
Helix 15	AB6	C	405	415	Right-handed alpha
Helix 16	AB7	C	420	431	Right-handed alpha
Helix 17	AB8	C	480	491	Right-handed alpha
Helix 18	AB9	C	491	509	Right-handed alpha
Helix 19	AC1	C	510	523	Right-handed alpha
Helix 20	AC2	C	526	535	Right-handed alpha
Helix 21	AC3	C	536	549	Right-handed alpha
Helix 22	AC4	C	554	576	Right-handed alpha
Helix 23	AC5	C	629	648	Right-handed alpha
Helix 24	AC6	C	678	684	Right-handed alpha
Helix 25	AC7	C	687	696	Right-handed alpha
Helix 26	AC8	C	707	728	Right-handed alpha
Helix 27	AC9	C	768	778	Right-handed alpha
Helix 28	AD1	C	778	815	Right-handed alpha
Helix 29	AD2	C	821	835	Right-handed alpha
Helix 30	AD3	C	841	856	Right-handed alpha
Helix 31	AD4	C	861	875	Right-handed alpha
Helix 32	AD5	B	61	65	Right-handed 310
Helix 33	AD6	B	68	81	Right-handed alpha
Helix 34	AD7	B	108	116	Right-handed alpha
Helix 35	AD8	B	121	142	Right-handed alpha
Helix 36	AD9	B	200	206	Right-handed alpha
Helix 37	AE1	B	208	214	Right-handed alpha
Helix 38	AE2	B	219	237	Right-handed alpha
Helix 39	AE3	B	242	251	Right-handed alpha
Helix 40	AE4	B	268	280	Right-handed alpha
Helix 41	AE5	B	287	293	Right-handed alpha
Helix 42	AE6	B	298	319	Right-handed alpha
Helix 43	AE7	B	332	357	Right-handed alpha
Helix 44	AE8	B	365	372	Right-handed alpha
Helix 45	AE9	B	410	418	Right-handed alpha
Helix 46	AF1	B	424	433	Right-handed alpha
Helix 47	AF2	B	439	452	Right-handed alpha
Helix 48	AF3	B	456	474	Right-handed alpha
Helix 49	AF4	B	478	493	Right-handed alpha
Helix 50	AF5	B	502	517	Right-handed alpha
Helix 51	AF6	B	526	536	Right-handed alpha
Helix 52	AF7	B	536	555	Right-handed alpha
Helix 53	AF8	B	570	602	Right-handed alpha
Helix 54	AF9	B	614	626	Right-handed alpha
Helix 55	AG1	B	627	630	Right-handed 310
Helix 56	AG2	B	634	650	Right-handed alpha
Helix 57	AG3	B	651	663	Right-handed alpha
Helix 58	AG4	B	670	682	Right-handed alpha
Helix 59	AG5	B	687	704	Right-handed alpha
Helix 60	AG6	B	707	721	Right-handed alpha
Helix 61	AG7	B	722	724	Right-handed 310
Helix 62	AG8	B	726	734	Right-handed alpha
Helix 63	AG9	B	734	742	Right-handed alpha
Helix 64	AH1	B	751	761	Right-handed alpha
Helix 65	AH2	B	768	778	Right-handed alpha
Helix 66	AH3	B	783	798	Right-handed alpha
Helix 67	AH4	B	835	844	Right-handed alpha
Helix 68	AH5	B	848	857	Right-handed alpha
Helix 69	AH6	B	862	866	Right-handed 310
Helix 70	AH7	B	869	882	Right-handed alpha
Helix 71	AH8	B	1001	1014	Right-handed alpha
Helix 72	AH9	B	1030	1038	Right-handed alpha
Helix 73	AI1	B	1045	1051	Right-handed alpha
Helix 74	AI2	B	1110	1115	Right-handed alpha
Helix 75	AI3	B	1180	1183	Right-handed 310
Helix 76	AI4	B	1228	1232	Right-handed 310
Helix 77	AI5	B	1324	1329	Right-handed alpha

There are 16 sheets in PDB entry 5KC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	90	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	111	first strand
Strand 2	C	123	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	580	first strand
Strand 2	C	588	589	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	599	first strand
Strand 2	C	607	612	anti-parallel
Strand 3	C	618	624	anti-parallel
Strand 4	C	668	671	anti-parallel
Strand 5	C	660	661	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	737	740	anti-parallel
Strand 3	C	744	747	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	40	43	anti-parallel
Strand 3	B	53	55	anti-parallel
Strand 4	B	100	102	anti-parallel
Strand 5	B	88	91	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1075	first strand
Strand 2	B	1450	1454	anti-parallel
Strand 3	B	1439	1445	anti-parallel
Strand 4	B	1427	1434	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1089	first strand
Strand 2	B	1095	1098	anti-parallel
Strand 3	B	1104	1109	anti-parallel
Strand 4	B	1123	1126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1131	1136	first strand
Strand 2	B	1143	1147	anti-parallel
Strand 3	B	1151	1162	anti-parallel
Strand 4	B	1165	1178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1191	1195	first strand
Strand 2	B	1200	1205	anti-parallel
Strand 3	B	1210	1215	anti-parallel
Strand 4	B	1220	1226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1238	1239	first strand
Strand 2	B	1245	1249	anti-parallel
Strand 3	B	1255	1259	anti-parallel
Strand 4	B	1264	1269	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1279	1281	first strand
Strand 2	B	1290	1294	anti-parallel
Strand 3	B	1300	1306	anti-parallel
Strand 4	B	1311	1318	anti-parallel
Strand 5	B	1402	1408	parallel
Strand 6	B	1392	1399	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1352	1355	first strand
Strand 2	B	1358	1363	anti-parallel
Strand 3	B	1368	1373	anti-parallel
Strand 4	B	1381	1384	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KC2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KC2