Analysis of interatomic Contacts of Structural Units in PDB entry:
5KC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KC8 entry

There is 1 chain in PDB entry 5KC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24LEU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5KC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 54Right-handed alpha
Helix 2
AA2
A
74 89Right-handed alpha
Helix 3
AA3
A
98 113Right-handed alpha
Helix 4
AA4
A
151 163Right-handed alpha
Helix 5
AA5
A
177 180Right-handed 310
Helix 6
AA6
A
181 191Right-handed alpha
Helix 7
AA7
A
203 215Right-handed alpha
Helix 8
AA8
A
216 227Right-handed alpha
Helix 9
AA9
A
235 249Right-handed alpha
Helix 10
AB1
A
266 277Right-handed alpha
Helix 11
AB2
A
293 298Right-handed alpha
Helix 12
AB3
A
306 311Right-handed alpha
Helix 13
AB4
A
314 319Right-handed alpha
Helix 14
AB5
A
321 344Right-handed alpha
Helix 15
AB6
A
365 375Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5KC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 70first strand
Strand 2
A
27 34parallel
Strand 3
A
93 97parallel
Strand 4
A
116 120parallel
Strand 5
A
143 145parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
167 172parallel
Strand 3
A
229 233parallel
Strand 4
A
257 261parallel
Strand 5
A
280 287parallel
Strand 6
A
397 402anti-parallel
Strand 7
A
414 420anti-parallel
Strand 8
A
424 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
383 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il