Analysis of interatomic Contacts of Structural Units in PDB entry:
5KC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KC9 entry

There are 3 chains in PDB entry 5KC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22LEU 425
B
 SER 22SER 424
C
 SER 22SER 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5KC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 52Right-handed alpha
Helix 2
AA2
A
71 85Right-handed alpha
Helix 3
AA3
A
95 110Right-handed alpha
Helix 4
AA4
A
148 160Right-handed alpha
Helix 5
AA5
A
174 177Right-handed 310
Helix 6
AA6
A
178 188Right-handed alpha
Helix 7
AA7
A
200 212Right-handed alpha
Helix 8
AA8
A
213 224Right-handed alpha
Helix 9
AA9
A
232 246Right-handed alpha
Helix 10
AB1
A
263 274Right-handed alpha
Helix 11
AB2
A
312 316Right-handed 310
Helix 12
AB3
A
317 340Right-handed alpha
Helix 13
AB4
A
361 371Right-handed alpha
Helix 14
AB5
B
34 50Right-handed alpha
Helix 15
AB6
B
71 85Right-handed alpha
Helix 16
AB7
B
95 110Right-handed alpha
Helix 17
AB8
B
148 160Right-handed alpha
Helix 18
AB9
B
174 177Right-handed 310
Helix 19
AC1
B
178 188Right-handed alpha
Helix 20
AC2
B
200 212Right-handed alpha
Helix 21
AC3
B
213 224Right-handed alpha
Helix 22
AC4
B
232 246Right-handed alpha
Helix 23
AC5
B
263 274Right-handed alpha
Helix 24
AC6
B
312 316Right-handed 310
Helix 25
AC7
B
317 340Right-handed alpha
Helix 26
AC8
B
361 371Right-handed alpha
Helix 27
AC9
C
34 49Right-handed alpha
Helix 28
AD1
C
71 85Right-handed alpha
Helix 29
AD2
C
95 110Right-handed alpha
Helix 30
AD3
C
148 160Right-handed alpha
Helix 31
AD4
C
174 177Right-handed 310
Helix 32
AD5
C
178 188Right-handed alpha
Helix 33
AD6
C
200 205Right-handed alpha
Helix 34
AD7
C
222 224Right-handed 310
Helix 35
AD8
C
232 246Right-handed alpha
Helix 36
AD9
C
263 274Right-handed alpha
Helix 37
AE1
C
302 307Right-handed alpha
Helix 38
AE2
C
308 311Right-handed 310
Helix 39
AE3
C
312 316Right-handed 310
Helix 40
AE4
C
317 339Right-handed alpha
Helix 41
AE5
C
361 371Right-handed alpha
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There are 11 sheets in PDB entry 5KC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 67first strand
Strand 2
A
23 31parallel
Strand 3
A
90 93parallel
Strand 4
A
113 115parallel
Strand 5
A
140 142parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
164 169parallel
Strand 3
A
226 230parallel
Strand 4
A
254 258parallel
Strand 5
A
277 283parallel
Strand 6
A
393 402anti-parallel
Strand 7
A
406 416anti-parallel
Strand 8
A
420 422anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
379 382anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
24 31parallel
Strand 3
B
90 94parallel
Strand 4
B
113 117parallel
Strand 5
B
140 142parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 197first strand
Strand 2
B
164 170parallel
Strand 3
B
226 230parallel
Strand 4
B
254 258parallel
Strand 5
B
277 283parallel
Strand 6
B
393 398anti-parallel
Strand 7
B
410 416anti-parallel
Strand 8
B
420 423anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
379 382anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 67first strand
Strand 2
C
24 31parallel
Strand 3
C
90 94parallel
Strand 4
C
113 117parallel
Strand 5
C
140 142parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 197first strand
Strand 2
C
164 170parallel
Strand 3
C
226 230parallel
Strand 4
C
254 258parallel
Strand 5
C
277 284parallel
Strand 6
C
393 399anti-parallel
Strand 7
C
409 416anti-parallel
Strand 8
C
420 422anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
295 296first strand
Strand 2
C
299 300anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 376first strand
Strand 2
C
379 382anti-parallel
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