Analysis of interatomic Contacts of Structural Units in PDB entry:
5KCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KCK entry

There is 1 chain in PDB entry 5KCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ARG 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5KCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
67 77Right-handed alpha
Helix 3
AA3
A
97 103Right-handed 310
Helix 4
AA4
A
149 165Right-handed alpha
Helix 5
AA5
A
187 204Right-handed alpha
Helix 6
AA6
A
223 235Right-handed alpha
Helix 7
AA7
A
283 293Right-handed alpha
Helix 8
AA8
A
294 315Right-handed alpha
Helix 9
AA9
A
316 321Right-handed 310
Helix 10
AB1
A
351 360Right-handed alpha
Helix 11
AB2
A
362 365Right-handed 310
Helix 12
AB3
A
369 381Right-handed alpha
Helix 13
AB4
A
430 445Right-handed alpha
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There are 4 sheets in PDB entry 5KCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
126 131anti-parallel
Strand 3
A
136 141anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
48 53anti-parallel
Strand 4
A
119 124anti-parallel
Strand 5
A
90 95anti-parallel
Strand 6
A
391 396anti-parallel
Strand 7
A
401 405anti-parallel
Strand 8
A
257 262anti-parallel
Strand 9
A
265 268anti-parallel
Strand 10
A
336 345anti-parallel
Strand 11
A
322 331anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
209 219anti-parallel
Strand 3
A
416 425anti-parallel
Strand 4
A
409 413anti-parallel
Strand 5
A
249 252anti-parallel
Strand 6
A
241 244anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
209 219anti-parallel
Strand 3
A
367 368anti-parallel
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