Analysis of interatomic Contacts of Structural Units in PDB entry:
5KCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KCM entry

There are 2 chains in PDB entry 5KCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 513
B
 SER 2HIS 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 5KCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
44 65Right-handed alpha
Helix 3
AA3
A
82 95Right-handed alpha
Helix 4
AA4
A
106 115Right-handed alpha
Helix 5
AA5
A
115 121Right-handed alpha
Helix 6
AA6
A
135 146Right-handed alpha
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
173 175Right-handed 310
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
201 215Right-handed alpha
Helix 11
AB2
A
230 245Right-handed alpha
Helix 12
AB3
A
246 249Right-handed 310
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
278 292Right-handed alpha
Helix 15
AB6
A
296 309Right-handed alpha
Helix 16
AB7
A
309 322Right-handed alpha
Helix 17
AB8
A
323 328Right-handed 310
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
348 362Right-handed alpha
Helix 20
AC2
A
365 372Right-handed alpha
Helix 21
AC3
A
372 380Right-handed alpha
Helix 22
AC4
A
383 395Right-handed alpha
Helix 23
AC5
A
399 409Right-handed alpha
Helix 24
AC6
A
427 435Right-handed alpha
Helix 25
AC7
A
436 441Right-handed 310
Helix 26
AC8
A
454 467Right-handed alpha
Helix 27
AC9
A
467 472Right-handed alpha
Helix 28
AD1
A
474 476Right-handed 310
Helix 29
AD2
A
477 487Right-handed alpha
Helix 30
AD3
A
488 511Right-handed alpha
Helix 31
AD4
B
16 20Right-handed 310
Helix 32
AD5
B
44 65Right-handed alpha
Helix 33
AD6
B
82 95Right-handed alpha
Helix 34
AD7
B
106 115Right-handed alpha
Helix 35
AD8
B
115 121Right-handed alpha
Helix 36
AD9
B
135 146Right-handed alpha
Helix 37
AE1
B
150 163Right-handed alpha
Helix 38
AE2
B
173 175Right-handed 310
Helix 39
AE3
B
178 182Right-handed 310
Helix 40
AE4
B
201 215Right-handed alpha
Helix 41
AE5
B
230 245Right-handed alpha
Helix 42
AE6
B
246 249Right-handed 310
Helix 43
AE7
B
268 274Right-handed alpha
Helix 44
AE8
B
278 292Right-handed alpha
Helix 45
AE9
B
296 309Right-handed alpha
Helix 46
AF1
B
309 322Right-handed alpha
Helix 47
AF2
B
323 328Right-handed 310
Helix 48
AF3
B
339 344Right-handed alpha
Helix 49
AF4
B
348 362Right-handed alpha
Helix 50
AF5
B
365 372Right-handed alpha
Helix 51
AF6
B
372 380Right-handed alpha
Helix 52
AF7
B
383 395Right-handed alpha
Helix 53
AF8
B
399 409Right-handed alpha
Helix 54
AF9
B
427 435Right-handed alpha
Helix 55
AG1
B
436 441Right-handed 310
Helix 56
AG2
B
454 467Right-handed alpha
Helix 57
AG3
B
467 472Right-handed alpha
Helix 58
AG4
B
474 476Right-handed 310
Helix 59
AG5
B
477 487Right-handed alpha
Helix 60
AG6
B
488 511Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5KCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
28 32parallel
Strand 3
A
3 6parallel
Strand 4
A
98 102parallel
Strand 5
A
123 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
28 32parallel
Strand 3
B
3 6parallel
Strand 4
B
98 102parallel
Strand 5
B
123 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
170 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il