Analysis of interatomic Contacts of Structural Units in PDB entry:
5KCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KCY entry

There are 2 chains in PDB entry 5KCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11VAL 421
B
 ARG 11VAL 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5KCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
34 45Right-handed alpha
Helix 4
AA4
A
48 63Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
124 137Right-handed alpha
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
155 165Right-handed alpha
Helix 9
AA9
A
193 201Right-handed alpha
Helix 10
AB1
A
203 214Right-handed alpha
Helix 11
AB2
A
215 221Right-handed alpha
Helix 12
AB3
A
221 236Right-handed alpha
Helix 13
AB4
A
275 285Right-handed alpha
Helix 14
AB5
A
291 308Right-handed alpha
Helix 15
AB6
A
351 366Right-handed alpha
Helix 16
AB7
A
368 383Right-handed alpha
Helix 17
AB8
B
12 21Right-handed alpha
Helix 18
AB9
B
24 33Right-handed alpha
Helix 19
AC1
B
34 45Right-handed alpha
Helix 20
AC2
B
48 63Right-handed alpha
Helix 21
AC3
B
64 67Right-handed 310
Helix 22
AC4
B
124 137Right-handed alpha
Helix 23
AC5
B
142 153Right-handed alpha
Helix 24
AC6
B
155 165Right-handed alpha
Helix 25
AC7
B
193 201Right-handed alpha
Helix 26
AC8
B
203 214Right-handed alpha
Helix 27
AC9
B
215 220Right-handed alpha
Helix 28
AD1
B
221 236Right-handed alpha
Helix 29
AD2
B
275 285Right-handed alpha
Helix 30
AD3
B
291 309Right-handed alpha
Helix 31
AD4
B
351 366Right-handed alpha
Helix 32
AD5
B
368 383Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5KCY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
184 192anti-parallel
Strand 5
A
249 256anti-parallel
Strand 6
A
265 271anti-parallel
Strand 7
A
325 331anti-parallel
Strand 8
A
342 346anti-parallel
Strand 9
A
395 402anti-parallel
Strand 10
A
408 415anti-parallel
Strand 11
A
91 96anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
174 181anti-parallel
Strand 4
B
184 192anti-parallel
Strand 5
B
249 256anti-parallel
Strand 6
B
265 271anti-parallel
Strand 7
B
325 331anti-parallel
Strand 8
B
342 346anti-parallel
Strand 9
B
395 402anti-parallel
Strand 10
B
408 415anti-parallel
Strand 11
B
91 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il