Analysis of interatomic Contacts of Structural Units in PDB entry:
5KD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KD0 entry

There are 2 chains in PDB entry 5KD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11VAL 421
B
 ARG 11VAL 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5KD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
34 45Right-handed alpha
Helix 4
AA4
A
48 63Right-handed alpha
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
124 137Right-handed alpha
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
155 165Right-handed alpha
Helix 9
AA9
A
166 171Right-handed 310
Helix 10
AB1
A
193 201Right-handed alpha
Helix 11
AB2
A
203 214Right-handed alpha
Helix 12
AB3
A
215 220Right-handed alpha
Helix 13
AB4
A
221 239Right-handed alpha
Helix 14
AB5
A
259 263Right-handed 310
Helix 15
AB6
A
275 285Right-handed alpha
Helix 16
AB7
A
291 307Right-handed alpha
Helix 17
AB8
A
351 367Right-handed alpha
Helix 18
AB9
A
368 383Right-handed alpha
Helix 19
AC1
B
12 21Right-handed alpha
Helix 20
AC2
B
24 33Right-handed alpha
Helix 21
AC3
B
34 45Right-handed alpha
Helix 22
AC4
B
48 63Right-handed alpha
Helix 23
AC5
B
64 68Right-handed 310
Helix 24
AC6
B
124 137Right-handed alpha
Helix 25
AC7
B
142 153Right-handed alpha
Helix 26
AC8
B
155 165Right-handed alpha
Helix 27
AC9
B
167 171Right-handed 310
Helix 28
AD1
B
193 201Right-handed alpha
Helix 29
AD2
B
203 214Right-handed alpha
Helix 30
AD3
B
215 220Right-handed alpha
Helix 31
AD4
B
221 239Right-handed alpha
Helix 32
AD5
B
259 263Right-handed 310
Helix 33
AD6
B
275 285Right-handed alpha
Helix 34
AD7
B
291 307Right-handed alpha
Helix 35
AD8
B
351 366Right-handed alpha
Helix 36
AD9
B
368 383Right-handed alpha
Helix 37
AE1
B
417 421Right-handed 310
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There are 2 sheets in PDB entry 5KD0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
184 192anti-parallel
Strand 5
A
249 256anti-parallel
Strand 6
A
265 271anti-parallel
Strand 7
A
325 331anti-parallel
Strand 8
A
342 346anti-parallel
Strand 9
A
395 402anti-parallel
Strand 10
A
408 414anti-parallel
Strand 11
A
90 96anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 96first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
174 181anti-parallel
Strand 4
B
184 192anti-parallel
Strand 5
B
249 256anti-parallel
Strand 6
B
265 271anti-parallel
Strand 7
B
325 331anti-parallel
Strand 8
B
342 346anti-parallel
Strand 9
B
395 402anti-parallel
Strand 10
B
408 414anti-parallel
Strand 11
B
90 96anti-parallel
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