Analysis of interatomic Contacts of Structural Units in PDB entry:
5KD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KD5 entry

There is 1 chain in PDB entry 5KD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 322LEU 857
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
322 329Right-handed alpha
Helix 2
AA2
A
338 347Right-handed alpha
Helix 3
AA3
A
452 456Right-handed alpha
Helix 4
AA4
A
457 468Right-handed alpha
Helix 5
AA5
A
486 493Right-handed alpha
Helix 6
AA6
A
497 515Right-handed alpha
Helix 7
AA7
A
550 552Right-handed 310
Helix 8
AA8
A
553 558Right-handed alpha
Helix 9
AA9
A
558 563Right-handed alpha
Helix 10
AB1
A
565 581Right-handed alpha
Helix 11
AB2
A
582 585Right-handed 310
Helix 12
AB3
A
594 606Right-handed alpha
Helix 13
AB4
A
615 623Right-handed alpha
Helix 14
AB5
A
641 646Right-handed alpha
Helix 15
AB6
A
646 657Right-handed alpha
Helix 16
AB7
A
664 677Right-handed alpha
Helix 17
AB8
A
683 700Right-handed alpha
Helix 18
AB9
A
703 710Right-handed alpha
Helix 19
AC1
A
731 743Right-handed alpha
Helix 20
AC2
A
751 755Right-handed 310
Helix 21
AC3
A
759 763Right-handed 310
Helix 22
AC4
A
767 773Right-handed alpha
Helix 23
AC5
A
778 784Right-handed alpha
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There are 7 sheets in PDB entry 5KD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 333first strand
Strand 2
A
435 438anti-parallel
Strand 3
A
367 372anti-parallel
Strand 4
A
407 412anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 404first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
417 422anti-parallel
Strand 4
A
357 362anti-parallel
Strand 5
A
445 446anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
394 395anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
472 476parallel
Strand 3
A
480 485anti-parallel
Strand 4
A
529 532parallel
Strand 5
A
546 548parallel
Strand 6
A
539 541anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 721first strand
Strand 2
A
725 730anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 797first strand
Strand 2
A
800 804anti-parallel
Strand 3
A
831 833anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 827first strand
Strand 2
A
811 816anti-parallel
Strand 3
A
843 848anti-parallel
Strand 4
A
854 856anti-parallel
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