Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDI entry

There are 2 chains in PDB entry 5KDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 309VAL 519
B
 PRO 309VAL 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5KDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
310 314Right-handed 310
Helix 2
AA2
A
318 322Right-handed 310
Helix 3
AA3
A
325 329Right-handed 310
Helix 4
AA4
A
331 341Right-handed alpha
Helix 5
AA5
A
342 350Right-handed alpha
Helix 6
AA6
A
354 373Right-handed alpha
Helix 7
AA7
A
381 392Right-handed alpha
Helix 8
AA8
A
400 424Right-handed alpha
Helix 9
AA9
A
428 440Right-handed alpha
Helix 10
AB1
A
441 445Right-handed 310
Helix 11
AB2
A
446 459Right-handed alpha
Helix 12
AB3
A
462 469Right-handed alpha
Helix 13
AB4
A
475 478Right-handed 310
Helix 14
AB5
A
479 511Right-handed alpha
Helix 15
AB6
B
310 314Right-handed 310
Helix 16
AB7
B
318 322Right-handed 310
Helix 17
AB8
B
325 329Right-handed 310
Helix 18
AB9
B
331 342Right-handed alpha
Helix 19
AC1
B
342 350Right-handed alpha
Helix 20
AC2
B
354 373Right-handed alpha
Helix 21
AC3
B
381 392Right-handed alpha
Helix 22
AC4
B
400 424Right-handed alpha
Helix 23
AC5
B
428 440Right-handed alpha
Helix 24
AC6
B
441 445Right-handed 310
Helix 25
AC7
B
446 458Right-handed alpha
Helix 26
AC8
B
462 471Right-handed alpha
Helix 27
AC9
B
472 476Right-handed 310
Helix 28
AD1
B
478 480Right-handed 310
Helix 29
AD2
B
481 511Right-handed alpha
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There are no sheets in PDB entry 5KDI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il