Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDL entry

There are 2 chains in PDB entry 5KDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 33VAL 346
B
 VAL 34ASN 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5KDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
62 69Right-handed alpha
Helix 3
AA3
A
69 92Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
120 133Right-handed alpha
Helix 6
AA6
A
133 141Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
151 157Right-handed alpha
Helix 9
AA9
A
158 164Right-handed alpha
Helix 10
AB1
A
170 176Right-handed alpha
Helix 11
AB2
A
204 209Right-handed alpha
Helix 12
AB3
A
210 215Right-handed 310
Helix 13
AB4
A
228 231Right-handed 310
Helix 14
AB5
A
241 255Right-handed alpha
Helix 15
AB6
A
270 279Right-handed alpha
Helix 16
AB7
A
282 286Right-handed 310
Helix 17
AB8
A
295 309Right-handed alpha
Helix 18
AB9
A
328 346Right-handed alpha
Helix 19
AC1
B
45 59Right-handed alpha
Helix 20
AC2
B
62 69Right-handed alpha
Helix 21
AC3
B
69 91Right-handed alpha
Helix 22
AC4
B
99 111Right-handed alpha
Helix 23
AC5
B
120 133Right-handed alpha
Helix 24
AC6
B
133 141Right-handed alpha
Helix 25
AC7
B
142 146Right-handed 310
Helix 26
AC8
B
151 158Right-handed alpha
Helix 27
AC9
B
158 164Right-handed alpha
Helix 28
AD1
B
170 177Right-handed alpha
Helix 29
AD2
B
204 216Right-handed 310
Helix 30
AD3
B
228 232Right-handed 310
Helix 31
AD4
B
241 255Right-handed alpha
Helix 32
AD5
B
256 260Right-handed 310
Helix 33
AD6
B
270 281Right-handed alpha
Helix 34
AD7
B
295 310Right-handed alpha
Helix 35
AD8
B
328 351Right-handed alpha
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There are 2 sheets in PDB entry 5KDL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
34 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 190first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
35 39parallel
Strand 4
B
220 226parallel
Strand 5
B
263 269parallel
Strand 6
B
319 323parallel
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