Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDM entry

There are 4 chains in PDB entry 5KDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37ALA 135
B
 ILE 26GLY 102
C
 ARG 182SER 386
D
 LEU 383ILE 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 58Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
86 110Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
49 76Right-handed alpha
Helix 7
AA7
B
82 91Right-handed alpha
Helix 8
AA8
B
92 93Right-handed 310
Helix 9
AA9
B
94 98Right-handed 310
Helix 10
AB1
C
184 208Right-handed alpha
Helix 11
AB2
C
211 217Right-handed alpha
Helix 12
AB3
C
220 243Right-handed alpha
Helix 13
AB4
C
266 273Right-handed alpha
Helix 14
AB5
C
285 299Right-handed alpha
Helix 15
AB6
C
305 335Right-handed alpha
Helix 16
AB7
C
338 343Right-handed alpha
Helix 17
AB8
C
349 353Right-handed 310
Helix 18
AB9
C
354 384Right-handed alpha
Helix 19
AC1
D
414 434Right-handed alpha
Helix 20
AC2
D
450 457Right-handed alpha
Helix 21
AC3
D
472 477Right-handed alpha
Helix 22
AC4
D
490 501Right-handed alpha
Helix 23
AC5
D
523 535Right-handed alpha
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There are 2 sheets in PDB entry 5KDM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
A
83 85parallel
Strand 3
C
209 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
508 512first strand
Strand 2
D
393 397anti-parallel
Strand 3
D
539 546anti-parallel
Strand 4
D
463 467anti-parallel
Strand 5
D
551 554parallel
Strand 6
D
575 576anti-parallel
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