Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDP entry

There is 1 chain in PDB entry 5KDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 44THR 681
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 5KDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 71Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
95 111Right-handed alpha
Helix 4
AA4
A
140 147Right-handed alpha
Helix 5
AA5
A
149 153Right-handed 310
Helix 6
AA6
A
161 171Right-handed alpha
Helix 7
AA7
A
171 176Right-handed alpha
Helix 8
AA8
A
180 192Right-handed alpha
Helix 9
AA9
A
194 200Right-handed alpha
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
A
229 243Right-handed alpha
Helix 12
AB3
A
248 250Right-handed 310
Helix 13
AB4
A
251 284Right-handed alpha
Helix 14
AB5
A
288 305Right-handed alpha
Helix 15
AB6
A
312 331Right-handed alpha
Helix 16
AB7
A
340 345Right-handed alpha
Helix 17
AB8
A
345 356Right-handed alpha
Helix 18
AB9
A
359 376Right-handed alpha
Helix 19
AC1
A
382 387Right-handed alpha
Helix 20
AC2
A
388 390Right-handed 310
Helix 21
AC3
A
412 426Right-handed alpha
Helix 22
AC4
A
441 454Right-handed alpha
Helix 23
AC5
A
464 474Right-handed alpha
Helix 24
AC6
A
477 483Right-handed alpha
Helix 25
AC7
A
509 518Right-handed alpha
Helix 26
AC8
A
535 539Right-handed 310
Helix 27
AC9
A
541 575Right-handed alpha
Helix 28
AD1
A
577 583Right-handed alpha
Helix 29
AD2
A
586 591Right-handed alpha
Helix 30
AD3
A
593 597Right-handed 310
Helix 31
AD4
A
611 627Right-handed alpha
Helix 32
AD5
A
633 643Right-handed alpha
Helix 33
AD6
A
648 658Right-handed alpha
Helix 34
AD7
A
665 685Right-handed alpha
Helix 35
AD8
A
702 708Right-handed alpha
Helix 36
AD9
A
737 747Right-handed alpha
Helix 37
AE1
A
748 753Right-handed 310
Helix 38
AE2
A
766 769Right-handed 310
Helix 39
AE3
A
770 788Right-handed alpha
Helix 40
AE4
A
798 808Right-handed alpha
Helix 41
AE5
A
809 812Right-handed 310
Helix 42
AE6
A
827 829Right-handed 310
Helix 43
AE7
A
830 840Right-handed alpha
Helix 44
AE8
C
59 71Right-handed alpha
Helix 45
AE9
C
78 91Right-handed alpha
Helix 46
AF1
C
95 111Right-handed alpha
Helix 47
AF2
C
140 147Right-handed alpha
Helix 48
AF3
C
161 171Right-handed alpha
Helix 49
AF4
C
171 177Right-handed alpha
Helix 50
AF5
C
180 192Right-handed alpha
Helix 51
AF6
C
194 199Right-handed alpha
Helix 52
AF7
C
207 212Right-handed alpha
Helix 53
AF8
C
229 243Right-handed alpha
Helix 54
AF9
C
248 250Right-handed 310
Helix 55
AG1
C
251 286Right-handed alpha
Helix 56
AG2
C
288 305Right-handed alpha
Helix 57
AG3
C
312 331Right-handed alpha
Helix 58
AG4
C
340 345Right-handed alpha
Helix 59
AG5
C
345 356Right-handed alpha
Helix 60
AG6
C
359 377Right-handed alpha
Helix 61
AG7
C
382 387Right-handed alpha
Helix 62
AG8
C
412 426Right-handed alpha
Helix 63
AG9
C
441 454Right-handed alpha
Helix 64
AH1
C
464 474Right-handed alpha
Helix 65
AH2
C
477 483Right-handed alpha
Helix 66
AH3
C
509 518Right-handed alpha
Helix 67
AH4
C
535 539Right-handed 310
Helix 68
AH5
C
541 575Right-handed alpha
Helix 69
AH6
C
577 583Right-handed alpha
Helix 70
AH7
C
586 591Right-handed alpha
Helix 71
AH8
C
593 597Right-handed 310
Helix 72
AH9
C
611 627Right-handed alpha
Helix 73
AI1
C
633 643Right-handed alpha
Helix 74
AI2
C
648 658Right-handed alpha
Helix 75
AI3
C
665 684Right-handed alpha
Helix 76
AI4
C
702 709Right-handed alpha
Helix 77
AI5
C
737 747Right-handed alpha
Helix 78
AI6
C
748 753Right-handed 310
Helix 79
AI7
C
766 769Right-handed 310
Helix 80
AI8
C
770 788Right-handed alpha
Helix 81
AI9
C
798 808Right-handed alpha
Helix 82
AJ1
C
809 812Right-handed 310
Helix 83
AJ2
C
827 829Right-handed 310
Helix 84
AJ3
C
830 840Right-handed alpha
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There are 12 sheets in PDB entry 5KDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
131 133parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
503 508anti-parallel
Strand 3
A
606 610parallel
Strand 4
A
694 696parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
431 436parallel
Strand 3
A
460 463parallel
Strand 4
A
791 797anti-parallel
Strand 5
A
760 764parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
491 493anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
601 602parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 818first strand
Strand 2
A
823 825anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
131 133parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 205first strand
Strand 2
C
505 508anti-parallel
Strand 3
C
606 610parallel
Strand 4
C
694 696parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 401first strand
Strand 2
C
431 436parallel
Strand 3
C
460 463parallel
Strand 4
C
791 797anti-parallel
Strand 5
C
760 764parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
485 487first strand
Strand 2
C
491 493anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
498 499first strand
Strand 2
C
601 602parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
816 818first strand
Strand 2
C
823 825anti-parallel
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