Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDR entry

There are 2 chains in PDB entry 5KDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLU 314
B
 ILE 29VAL 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5KDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
31 50Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
116 124Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
129 147Right-handed alpha
Helix 8
AA8
A
162 168Right-handed alpha
Helix 9
AA9
A
169 183Right-handed alpha
Helix 10
AB1
A
197 203Right-handed alpha
Helix 11
AB2
A
222 230Right-handed alpha
Helix 12
AB3
A
236 245Right-handed alpha
Helix 13
AB4
A
247 254Right-handed alpha
Helix 14
AB5
A
267 270Right-handed 310
Helix 15
AB6
A
271 290Right-handed alpha
Helix 16
AB7
A
294 308Right-handed alpha
Helix 17
AB8
B
42 48Right-handed alpha
Helix 18
AB9
B
62 71Right-handed alpha
Helix 19
AC1
B
93 106Right-handed alpha
Helix 20
AC2
B
131 136Right-handed 310
Helix 21
AC3
B
138 156Right-handed alpha
Helix 22
AC4
B
169 171Right-handed 310
Helix 23
AC5
B
172 193Right-handed alpha
Helix 24
AC6
B
206 211Right-handed alpha
Helix 25
AC7
B
212 216Right-handed 310
Helix 26
AC8
B
232 240Right-handed alpha
Helix 27
AC9
B
250 257Right-handed alpha
Helix 28
AD1
B
268 280Right-handed alpha
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There are 4 sheets in PDB entry 5KDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
150 156parallel
Strand 5
A
188 196parallel
Strand 6
A
209 213parallel
Strand 7
A
259 261parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
B
84 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
39 41anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
159 165parallel
Strand 5
B
197 205parallel
Strand 6
B
219 222parallel
Strand 7
B
262 263parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il