Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDS entry

There are 2 chains in PDB entry 5KDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 THR 4GLY 8
A
 HIS 493ASN 1003
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
505 513Right-handed alpha
Helix 2
AA2
A
579 584Right-handed alpha
Helix 3
AA3
A
601 605Right-handed 310
Helix 4
AA4
A
628 646Right-handed alpha
Helix 5
AA5
A
666 678Right-handed alpha
Helix 6
AA6
A
680 699Right-handed alpha
Helix 7
AA7
A
705 709Right-handed 310
Helix 8
AA8
A
741 748Right-handed alpha
Helix 9
AA9
A
751 763Right-handed alpha
Helix 10
AB1
A
772 774Right-handed 310
Helix 11
AB2
A
775 786Right-handed alpha
Helix 12
AB3
A
789 794Right-handed alpha
Helix 13
AB4
A
795 800Right-handed alpha
Helix 14
AB5
A
800 806Right-handed alpha
Helix 15
AB6
A
823 826Right-handed 310
Helix 16
AB7
A
827 837Right-handed alpha
Helix 17
AB8
A
839 851Right-handed alpha
Helix 18
AB9
A
857 874Right-handed alpha
Helix 19
AC1
A
877 885Right-handed alpha
Helix 20
AC2
A
889 897Right-handed alpha
Helix 21
AC3
A
905 909Right-handed 310
Helix 22
AC4
A
910 914Right-handed 310
Helix 23
AC5
A
946 949Right-handed 310
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There are 6 sheets in PDB entry 5KDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
610 614anti-parallel
Strand 3
A
533 539anti-parallel
Strand 4
A
569 574anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
548 553anti-parallel
Strand 3
A
593 598anti-parallel
Strand 4
A
522 528anti-parallel
Strand 5
A
617 618anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 623first strand
Strand 2
A
654 657parallel
Strand 3
A
662 665anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 719first strand
Strand 2
A
734 737parallel
Strand 3
A
728 731anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 934first strand
Strand 2
A
937 944anti-parallel
Strand 3
A
971 974anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 967first strand
Strand 2
A
952 959anti-parallel
Strand 3
A
985 991anti-parallel
Strand 4
A
1000 1001anti-parallel
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