Analysis of interatomic Contacts of Structural Units in PDB entry:
5KDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KDV entry

There is 1 chain in PDB entry 5KDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 41HIS 931
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5KDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 55Right-handed alpha
Helix 2
AA2
A
62 90Right-handed alpha
Helix 3
AA3
A
131 134Right-handed 310
Helix 4
AA4
A
142 146Right-handed 310
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
154 168Right-handed alpha
Helix 7
AA7
A
186 197Right-handed alpha
Helix 8
AA8
A
211 218Right-handed alpha
Helix 9
AA9
A
231 243Right-handed alpha
Helix 10
AB1
A
257 267Right-handed alpha
Helix 11
AB2
A
289 300Right-handed alpha
Helix 12
AB3
A
303 313Right-handed alpha
Helix 13
AB4
A
320 324Right-handed 310
Helix 14
AB5
A
338 359Right-handed alpha
Helix 15
AB6
A
362 366Right-handed 310
Helix 16
AB7
A
369 386Right-handed alpha
Helix 17
AB8
A
395 407Right-handed alpha
Helix 18
AB9
A
427 433Right-handed alpha
Helix 19
AC1
A
485 489Right-handed 310
Helix 20
AC2
A
560 574Right-handed alpha
Helix 21
AC3
A
592 604Right-handed alpha
Helix 22
AC4
A
606 617Right-handed alpha
Helix 23
AC5
A
618 626Right-handed alpha
Helix 24
AC6
A
636 646Right-handed alpha
Helix 25
AC7
A
652 657Right-handed alpha
Helix 26
AC8
A
691 702Right-handed alpha
Helix 27
AC9
A
703 708Right-handed 310
Helix 28
AD1
A
710 715Right-handed 310
Helix 29
AD2
A
717 719Right-handed 310
Helix 30
AD3
A
720 735Right-handed alpha
Helix 31
AD4
A
744 756Right-handed alpha
Helix 32
AD5
A
760 770Right-handed alpha
Helix 33
AD6
A
778 798Right-handed alpha
Helix 34
AD7
A
804 820Right-handed alpha
Helix 35
AD8
A
821 826Right-handed alpha
Helix 36
AD9
A
847 862Right-handed alpha
Helix 37
AE1
A
865 872Right-handed alpha
Helix 38
AE2
A
877 888Right-handed alpha
Helix 39
AE3
A
904 908Right-handed 310
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There are 7 sheets in PDB entry 5KDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
270 271anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
136 139anti-parallel
Strand 4
A
246 249parallel
Strand 5
A
220 223parallel
Strand 6
A
178 183parallel
Strand 7
A
201 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
330 332anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 445first strand
Strand 2
A
538 544anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
516 518anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 459first strand
Strand 2
A
524 531anti-parallel
Strand 3
A
476 481anti-parallel
Strand 4
A
508 509anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 553first strand
Strand 2
A
578 583parallel
Strand 3
A
586 591anti-parallel
Strand 4
A
662 666parallel
Strand 5
A
681 683parallel
Strand 6
A
675 676anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
909 912anti-parallel
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