Analysis of interatomic Contacts of Structural Units in PDB entry:
5KE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KE1 entry

There are 2 chains in PDB entry 5KE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 419ASP 740
B
 ASN 422ASP 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5KE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
443 448Right-handed alpha
Helix 2
AA2
A
450 452Right-handed 310
Helix 3
AA3
A
485 487Right-handed 310
Helix 4
AA4
B
443 448Right-handed alpha
Helix 5
AA5
B
450 452Right-handed 310
Helix 6
AA6
B
485 487Right-handed 310
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There are 10 sheets in PDB entry 5KE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
454 457parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 473first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
437 441anti-parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 497first strand
Strand 2
A
527 530parallel
Strand 3
A
547 549parallel
Strand 4
A
568 570parallel
Strand 5
A
583 590parallel
Strand 6
A
608 616parallel
Strand 7
A
634 638parallel
Strand 8
A
663 666parallel
Strand 9
A
692 697parallel
Strand 10
A
732 739anti-parallel
Strand 11
A
716 722anti-parallel
Strand 12
A
711 713anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 506first strand
Strand 2
A
534 537parallel
Strand 3
A
553 556parallel
Strand 4
A
575 577parallel
Strand 5
A
593 595parallel
Strand 6
A
621 623parallel
Strand 7
A
647 652parallel
Strand 8
A
674 680parallel
Strand 9
A
705 707parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 617first strand
Strand 2
A
641 644parallel
Strand 3
A
670 673parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 426first strand
Strand 2
B
454 457parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 473first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
436 441anti-parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 497first strand
Strand 2
B
527 530parallel
Strand 3
B
547 549parallel
Strand 4
B
568 570parallel
Strand 5
B
583 590parallel
Strand 6
B
608 616parallel
Strand 7
B
634 638parallel
Strand 8
B
663 666parallel
Strand 9
B
692 697parallel
Strand 10
B
732 738anti-parallel
Strand 11
B
717 722anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 506first strand
Strand 2
B
534 537parallel
Strand 3
B
553 556parallel
Strand 4
B
575 577parallel
Strand 5
B
593 595parallel
Strand 6
B
621 623parallel
Strand 7
B
647 652parallel
Strand 8
B
674 680parallel
Strand 9
B
705 707parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
614 616first strand
Strand 2
B
641 644parallel
Strand 3
B
670 673parallel
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