Analysis of interatomic Contacts of Structural Units in PDB entry:
5KEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KEV entry

There are 2 chains in PDB entry 5KEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 164TYR 253
B
PRO 31TYR 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5KEV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
182 200Right-handed alpha
Helix 2
AA2
A
239 253Right-handed alpha
Helix 3
AA3
B
123 128Right-handed alpha
Helix 4
AA4
B
149 153Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5KEV.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 172first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
206 211parallel
Strand 4
A
215 221anti-parallel
Strand 5
A
227 233anti-parallel
Strand 6
B
33 43parallel
Strand 7
B
154 161anti-parallel
Strand 8
B
143 148anti-parallel
Strand 9
B
132 139anti-parallel
Strand 10
B
96 108anti-parallel
Strand 11
B
77 93anti-parallel
Strand 12
B
62 72anti-parallel
Strand 13
B
49 58anti-parallel
Strand 14
B
33 43anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il