Analysis of interatomic Contacts of Structural Units in PDB entry:
5KF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KF0 entry

There are 3 chains in PDB entry 5KF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -2	ARG 477
B	LEU 2	ARG 477
C	LEU 2	SER 311

There are 84 helices in PDB entry 5KF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	53	Right-handed alpha
Helix 2	AA2	A	53	60	Right-handed alpha
Helix 3	AA3	A	61	79	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	94	116	Right-handed alpha
Helix 6	AA6	A	129	133	Right-handed 310
Helix 7	AA7	A	155	171	Right-handed alpha
Helix 8	AA8	A	183	195	Right-handed alpha
Helix 9	AA9	A	209	212	Right-handed 310
Helix 10	AB1	A	213	219	Right-handed alpha
Helix 11	AB2	A	230	241	Right-handed alpha
Helix 12	AB3	A	262	264	Right-handed 310
Helix 13	AB4	A	265	279	Right-handed alpha
Helix 14	AB5	A	280	283	Right-handed 310
Helix 15	AB6	A	297	312	Right-handed alpha
Helix 16	AB7	A	329	346	Right-handed alpha
Helix 17	AB8	A	373	378	Right-handed alpha
Helix 18	AB9	A	392	402	Right-handed alpha
Helix 19	AC1	A	415	426	Right-handed alpha
Helix 20	AC2	A	449	451	Right-handed 310
Helix 21	AC3	A	458	466	Right-handed alpha
Helix 22	AC4	B	39	53	Right-handed alpha
Helix 23	AC5	B	53	60	Right-handed alpha
Helix 24	AC6	B	61	79	Right-handed alpha
Helix 25	AC7	B	79	92	Right-handed alpha
Helix 26	AC8	B	94	117	Right-handed alpha
Helix 27	AC9	B	129	133	Right-handed 310
Helix 28	AD1	B	157	171	Right-handed alpha
Helix 29	AD2	B	183	195	Right-handed alpha
Helix 30	AD3	B	209	212	Right-handed 310
Helix 31	AD4	B	213	219	Right-handed alpha
Helix 32	AD5	B	230	241	Right-handed alpha
Helix 33	AD6	B	262	264	Right-handed 310
Helix 34	AD7	B	265	279	Right-handed alpha
Helix 35	AD8	B	280	283	Right-handed 310
Helix 36	AD9	B	297	312	Right-handed alpha
Helix 37	AE1	B	329	346	Right-handed alpha
Helix 38	AE2	B	373	378	Right-handed alpha
Helix 39	AE3	B	392	402	Right-handed alpha
Helix 40	AE4	B	415	426	Right-handed alpha
Helix 41	AE5	B	449	451	Right-handed 310
Helix 42	AE6	B	458	466	Right-handed alpha
Helix 43	AE7	C	39	53	Right-handed alpha
Helix 44	AE8	C	53	60	Right-handed alpha
Helix 45	AE9	C	61	79	Right-handed alpha
Helix 46	AF1	C	79	92	Right-handed alpha
Helix 47	AF2	C	94	116	Right-handed alpha
Helix 48	AF3	C	129	133	Right-handed 310
Helix 49	AF4	C	155	171	Right-handed alpha
Helix 50	AF5	C	183	195	Right-handed alpha
Helix 51	AF6	C	209	213	Right-handed 310
Helix 52	AF7	C	214	219	Right-handed alpha
Helix 53	AF8	C	230	241	Right-handed alpha
Helix 54	AF9	C	262	264	Right-handed 310
Helix 55	AG1	C	265	279	Right-handed alpha
Helix 56	AG2	C	280	283	Right-handed 310
Helix 57	AG3	C	297	312	Right-handed alpha
Helix 58	AG4	C	329	346	Right-handed alpha
Helix 59	AG5	C	373	378	Right-handed alpha
Helix 60	AG6	C	392	402	Right-handed alpha
Helix 61	AG7	C	415	426	Right-handed alpha
Helix 62	AG8	C	449	451	Right-handed 310
Helix 63	AG9	C	458	466	Right-handed alpha
Helix 64	AH1	D	39	53	Right-handed alpha
Helix 65	AH2	D	53	60	Right-handed alpha
Helix 66	AH3	D	61	79	Right-handed alpha
Helix 67	AH4	D	79	92	Right-handed alpha
Helix 68	AH5	D	94	117	Right-handed alpha
Helix 69	AH6	D	129	133	Right-handed 310
Helix 70	AH7	D	155	171	Right-handed alpha
Helix 71	AH8	D	183	195	Right-handed alpha
Helix 72	AH9	D	209	213	Right-handed 310
Helix 73	AI1	D	214	219	Right-handed alpha
Helix 74	AI2	D	230	241	Right-handed alpha
Helix 75	AI3	D	262	264	Right-handed 310
Helix 76	AI4	D	265	279	Right-handed alpha
Helix 77	AI5	D	280	283	Right-handed 310
Helix 78	AI6	D	295	312	Right-handed alpha
Helix 79	AI7	D	329	346	Right-handed alpha
Helix 80	AI8	D	373	378	Right-handed alpha
Helix 81	AI9	D	392	402	Right-handed alpha
Helix 82	AJ1	D	415	426	Right-handed alpha
Helix 83	AJ2	D	449	451	Right-handed 310
Helix 84	AJ3	D	458	466	Right-handed alpha

There are 18 sheets in PDB entry 5KF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	31	35	parallel
Strand 3	A	21	24	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	15	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	364	367	anti-parallel
Strand 3	B	384	390	parallel
Strand 4	B	290	294	parallel
Strand 5	B	255	258	parallel
Strand 6	B	408	412	parallel
Strand 7	B	430	433	parallel
Strand 8	A	467	475	parallel
Strand 9	A	135	143	anti-parallel
Strand 10	A	121	125	anti-parallel
Strand 11	D	121	125	anti-parallel
Strand 12	D	135	143	anti-parallel
Strand 13	D	467	475	anti-parallel
Strand 14	C	430	433	parallel
Strand 15	C	408	412	parallel
Strand 16	C	255	258	parallel
Strand 17	C	290	294	parallel
Strand 18	C	384	390	parallel
Strand 19	C	364	367	parallel
Strand 20	C	349	352	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	174	177	parallel
Strand 3	A	147	150	parallel
Strand 4	A	224	228	parallel
Strand 5	A	245	249	parallel
Strand 6	A	453	454	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	364	367	anti-parallel
Strand 3	A	384	390	parallel
Strand 4	A	290	294	parallel
Strand 5	A	255	258	parallel
Strand 6	A	408	412	parallel
Strand 7	A	430	433	parallel
Strand 8	B	467	475	parallel
Strand 9	B	135	143	anti-parallel
Strand 10	B	121	125	anti-parallel
Strand 11	C	121	125	anti-parallel
Strand 12	C	135	143	anti-parallel
Strand 13	C	467	475	anti-parallel
Strand 14	D	430	433	parallel
Strand 15	D	408	412	parallel
Strand 16	D	255	258	parallel
Strand 17	D	290	294	parallel
Strand 18	D	384	390	parallel
Strand 19	D	364	367	parallel
Strand 20	D	349	352	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	360	361	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	31	35	parallel
Strand 3	B	21	24	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	15	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	174	177	parallel
Strand 3	B	147	150	parallel
Strand 4	B	224	228	parallel
Strand 5	B	245	249	parallel
Strand 6	B	453	454	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	360	361	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	31	35	parallel
Strand 3	C	21	24	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	13	15	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	174	177	parallel
Strand 3	C	147	150	parallel
Strand 4	C	224	228	parallel
Strand 5	C	245	249	parallel
Strand 6	C	453	454	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	360	361	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	31	35	parallel
Strand 3	D	21	24	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	13	15	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	174	177	parallel
Strand 3	D	147	150	parallel
Strand 4	D	224	228	parallel
Strand 5	D	245	249	parallel
Strand 6	D	453	454	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	360	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KF0