Analysis of interatomic Contacts of Structural Units in PDB entry:
5KF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KF4 entry

There are 4 chains in PDB entry 5KF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 368	PRO 466
B	PRO 368	PRO 466
C	ALA 369	THR 464
D	ALA 369	ALA 465

There are no helices in PDB entry 5KF4

There are 10 sheets in PDB entry 5KF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	393	398	anti-parallel
Strand 3	A	381	386	anti-parallel
Strand 4	C	381	386	parallel
Strand 5	C	393	398	anti-parallel
Strand 6	C	430	433	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	425	first strand
Strand 2	A	406	413	anti-parallel
Strand 3	A	441	450	anti-parallel
Strand 4	A	453	454	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	425	first strand
Strand 2	A	406	413	anti-parallel
Strand 3	A	441	450	anti-parallel
Strand 4	A	458	463	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	393	398	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	D	381	386	parallel
Strand 5	D	393	398	anti-parallel
Strand 6	D	430	433	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	425	first strand
Strand 2	B	406	413	anti-parallel
Strand 3	B	441	450	anti-parallel
Strand 4	B	453	454	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	425	first strand
Strand 2	B	406	413	anti-parallel
Strand 3	B	441	450	anti-parallel
Strand 4	B	458	463	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	425	first strand
Strand 2	C	406	413	anti-parallel
Strand 3	C	441	450	anti-parallel
Strand 4	C	453	454	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	425	first strand
Strand 2	C	406	413	anti-parallel
Strand 3	C	441	450	anti-parallel
Strand 4	C	458	463	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	425	first strand
Strand 2	D	406	413	anti-parallel
Strand 3	D	441	450	anti-parallel
Strand 4	D	453	454	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	425	first strand
Strand 2	D	406	413	anti-parallel
Strand 3	D	441	450	anti-parallel
Strand 4	D	458	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KF4