Analysis of interatomic Contacts of Structural Units in PDB entry:
5KF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KF8 entry

There is 1 chain in PDB entry 5KF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
85 88Right-handed 310
Helix 4
AA4
A
91 107Right-handed alpha
Helix 5
AA5
A
128 130Right-handed 310
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
155 157Right-handed 310
Helix 8
AA8
A
174 176Right-handed 310
Helix 9
AA9
A
177 189Right-handed alpha
Helix 10
AB1
A
191 203Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
239 243Right-handed 310
Helix 14
AB5
A
257 260Right-handed 310
Helix 15
AB6
A
263 279Right-handed alpha
Helix 16
AB7
A
293 299Right-handed alpha
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There are 2 sheets in PDB entry 5KF8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 49anti-parallel
Strand 3
A
52 61anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
111 114parallel
Strand 6
A
303 314anti-parallel
Strand 7
A
125 126anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 49anti-parallel
Strand 3
A
52 61anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
111 114parallel
Strand 6
A
303 314anti-parallel
Strand 7
A
142 153anti-parallel
Strand 8
A
283 290anti-parallel
Strand 9
A
248 255parallel
Strand 10
A
218 226anti-parallel
Strand 11
A
210 215anti-parallel
Strand 12
A
168 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il