Analysis of interatomic Contacts of Structural Units in PDB entry:
5KG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KG8 entry

There are 4 chains in PDB entry 5KG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ARG 738
B	THR 5	HIS 371
C	THR 5	HIS 371
D	THR 5	HIS 371

There are 67 helices in PDB entry 5KG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	49	Right-handed 310
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	75	90	Right-handed alpha
Helix 4	AA4	A	132	148	Right-handed alpha
Helix 5	AA5	A	162	178	Right-handed alpha
Helix 6	AA6	A	200	208	Right-handed alpha
Helix 7	AA7	A	246	251	Right-handed 310
Helix 8	AA8	A	260	270	Right-handed alpha
Helix 9	AA9	A	271	278	Right-handed alpha
Helix 10	AB1	A	282	285	Right-handed 310
Helix 11	AB2	A	286	291	Right-handed alpha
Helix 12	AB3	A	300	316	Right-handed alpha
Helix 13	AB4	A	319	339	Right-handed alpha
Helix 14	AB5	A	354	363	Right-handed alpha
Helix 15	AB6	A	365	373	Right-handed alpha
Helix 16	AB7	A	390	421	Right-handed alpha
Helix 17	AB8	A	445	478	Right-handed alpha
Helix 18	AB9	A	489	498	Right-handed alpha
Helix 19	AC1	A	501	511	Right-handed alpha
Helix 20	AC2	A	516	529	Right-handed alpha
Helix 21	AC3	A	559	565	Right-handed alpha
Helix 22	AC4	A	569	578	Right-handed alpha
Helix 23	AC5	A	610	628	Right-handed alpha
Helix 24	AC6	A	649	660	Right-handed alpha
Helix 25	AC7	A	661	671	Right-handed alpha
Helix 26	AC8	A	679	687	Right-handed alpha
Helix 27	AC9	A	688	691	Right-handed 310
Helix 28	AD1	A	698	711	Right-handed alpha
Helix 29	AD2	A	727	738	Right-handed alpha
Helix 30	AD3	B	56	60	Right-handed 310
Helix 31	AD4	B	78	93	Right-handed alpha
Helix 32	AD5	B	119	127	Right-handed alpha
Helix 33	AD6	B	138	143	Right-handed 310
Helix 34	AD7	B	205	215	Right-handed alpha
Helix 35	AD8	B	222	231	Right-handed alpha
Helix 36	AD9	B	252	260	Right-handed alpha
Helix 37	AE1	B	273	280	Right-handed alpha
Helix 38	AE2	B	310	321	Right-handed alpha
Helix 39	AE3	B	334	336	Right-handed 310
Helix 40	AE4	B	337	349	Right-handed alpha
Helix 41	AE5	B	351	356	Right-handed 310
Helix 42	AE6	C	56	61	Right-handed alpha
Helix 43	AE7	C	78	93	Right-handed alpha
Helix 44	AE8	C	119	127	Right-handed alpha
Helix 45	AE9	C	137	141	Right-handed alpha
Helix 46	AF1	C	205	215	Right-handed alpha
Helix 47	AF2	C	222	231	Right-handed alpha
Helix 48	AF3	C	252	260	Right-handed alpha
Helix 49	AF4	C	273	280	Right-handed alpha
Helix 50	AF5	C	310	321	Right-handed alpha
Helix 51	AF6	C	334	336	Right-handed 310
Helix 52	AF7	C	337	349	Right-handed alpha
Helix 53	AF8	C	351	356	Right-handed 310
Helix 54	AF9	C	359	363	Right-handed 310
Helix 55	AG1	D	56	60	Right-handed 310
Helix 56	AG2	D	78	93	Right-handed alpha
Helix 57	AG3	D	119	127	Right-handed alpha
Helix 58	AG4	D	138	143	Right-handed 310
Helix 59	AG5	D	202	215	Right-handed alpha
Helix 60	AG6	D	222	231	Right-handed alpha
Helix 61	AG7	D	252	260	Right-handed alpha
Helix 62	AG8	D	273	280	Right-handed alpha
Helix 63	AG9	D	310	321	Right-handed alpha
Helix 64	AH1	D	334	336	Right-handed 310
Helix 65	AH2	D	337	349	Right-handed alpha
Helix 66	AH3	D	351	356	Right-handed 310
Helix 67	AH4	D	359	363	Right-handed 310

There are 21 sheets in PDB entry 5KG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	18	28	anti-parallel
Strand 4	A	10	15	anti-parallel
Strand 5	A	55	56	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	630	637	parallel
Strand 4	A	151	156	parallel
Strand 5	A	431	435	parallel
Strand 6	A	222	229	anti-parallel
Strand 7	A	235	243	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	215	219	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	387	388	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	383	384	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	545	547	anti-parallel
Strand 3	A	552	554	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	678	first strand
Strand 2	A	723	726	anti-parallel
Strand 3	A	717	719	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	104	105	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	37	anti-parallel
Strand 3	B	66	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand
Strand 2	B	159	165	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	11	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	29	31	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	66	68	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	134	136	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	156	first strand
Strand 2	C	159	165	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	11	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	29	31	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	134	136	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	156	first strand
Strand 2	D	159	165	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KG8