Analysis of interatomic Contacts of Structural Units in PDB entry:
5KGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KGA entry

There are 2 chains in PDB entry 5KGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 316
B
 MET 1LYS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5KGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
85 88Right-handed 310
Helix 4
AA4
A
91 107Right-handed alpha
Helix 5
AA5
A
128 130Right-handed 310
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
174 176Right-handed 310
Helix 8
AA8
A
177 189Right-handed alpha
Helix 9
AA9
A
191 203Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
239 243Right-handed 310
Helix 13
AB4
A
257 260Right-handed 310
Helix 14
AB5
A
263 279Right-handed alpha
Helix 15
AB6
A
293 299Right-handed alpha
Helix 16
AB7
B
8 21Right-handed alpha
Helix 17
AB8
B
27 38Right-handed alpha
Helix 18
AB9
B
85 88Right-handed 310
Helix 19
AC1
B
91 107Right-handed alpha
Helix 20
AC2
B
128 130Right-handed 310
Helix 21
AC3
B
131 139Right-handed alpha
Helix 22
AC4
B
174 176Right-handed 310
Helix 23
AC5
B
177 189Right-handed alpha
Helix 24
AC6
B
191 203Right-handed alpha
Helix 25
AC7
B
206 208Right-handed 310
Helix 26
AC8
B
234 238Right-handed 310
Helix 27
AC9
B
239 243Right-handed 310
Helix 28
AD1
B
257 260Right-handed 310
Helix 29
AD2
B
263 279Right-handed alpha
Helix 30
AD3
B
293 299Right-handed alpha
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There are 4 sheets in PDB entry 5KGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 49anti-parallel
Strand 3
A
52 61anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
111 114parallel
Strand 6
A
303 314anti-parallel
Strand 7
A
125 126anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 49anti-parallel
Strand 3
A
52 61anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
111 114parallel
Strand 6
A
303 314anti-parallel
Strand 7
A
141 153anti-parallel
Strand 8
A
283 290anti-parallel
Strand 9
A
248 255parallel
Strand 10
A
218 227anti-parallel
Strand 11
A
210 215anti-parallel
Strand 12
A
168 172anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
41 49anti-parallel
Strand 3
B
52 61anti-parallel
Strand 4
B
75 83anti-parallel
Strand 5
B
111 114parallel
Strand 6
B
303 314anti-parallel
Strand 7
B
125 126anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
41 49anti-parallel
Strand 3
B
52 61anti-parallel
Strand 4
B
75 83anti-parallel
Strand 5
B
111 114parallel
Strand 6
B
303 314anti-parallel
Strand 7
B
142 153anti-parallel
Strand 8
B
283 290anti-parallel
Strand 9
B
248 255parallel
Strand 10
B
218 227anti-parallel
Strand 11
B
210 215anti-parallel
Strand 12
B
168 172anti-parallel
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