Analysis of interatomic Contacts of Structural Units in PDB entry:
5KGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KGL entry

There are 2 chains in PDB entry 5KGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20ILE 539
B
 ALA 20ILE 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5KGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
55 62Right-handed alpha
Helix 3
AA3
A
72 77Right-handed 310
Helix 4
AA4
A
85 96Right-handed alpha
Helix 5
AA5
A
101 112Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
149 163Right-handed alpha
Helix 8
AA8
A
183 198Right-handed alpha
Helix 9
AA9
A
210 214Right-handed alpha
Helix 10
AB1
A
219 233Right-handed alpha
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
256 260Right-handed 310
Helix 13
AB4
A
266 271Right-handed 310
Helix 14
AB5
A
288 297Right-handed alpha
Helix 15
AB6
A
299 304Right-handed alpha
Helix 16
AB7
A
339 347Right-handed alpha
Helix 17
AB8
A
359 364Right-handed alpha
Helix 18
AB9
A
390 394Right-handed 310
Helix 19
AC1
A
398 413Right-handed alpha
Helix 20
AC2
A
423 430Right-handed alpha
Helix 21
AC3
A
433 458Right-handed alpha
Helix 22
AC4
A
510 512Right-handed 310
Helix 23
AC5
A
513 522Right-handed alpha
Helix 24
AC6
B
23 27Right-handed 310
Helix 25
AC7
B
48 53Right-handed alpha
Helix 26
AC8
B
55 62Right-handed alpha
Helix 27
AC9
B
72 77Right-handed 310
Helix 28
AD1
B
85 96Right-handed alpha
Helix 29
AD2
B
101 112Right-handed alpha
Helix 30
AD3
B
118 130Right-handed alpha
Helix 31
AD4
B
149 164Right-handed alpha
Helix 32
AD5
B
183 197Right-handed alpha
Helix 33
AD6
B
210 214Right-handed alpha
Helix 34
AD7
B
219 233Right-handed alpha
Helix 35
AD8
B
242 253Right-handed alpha
Helix 36
AD9
B
256 260Right-handed 310
Helix 37
AE1
B
266 271Right-handed alpha
Helix 38
AE2
B
285 287Right-handed 310
Helix 39
AE3
B
288 297Right-handed alpha
Helix 40
AE4
B
299 304Right-handed alpha
Helix 41
AE5
B
339 347Right-handed alpha
Helix 42
AE6
B
358 360Right-handed 310
Helix 43
AE7
B
398 413Right-handed alpha
Helix 44
AE8
B
423 430Right-handed alpha
Helix 45
AE9
B
433 459Right-handed alpha
Helix 46
AF1
B
510 512Right-handed 310
Helix 47
AF2
B
513 523Right-handed alpha
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There are 8 sheets in PDB entry 5KGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 383first strand
Strand 2
A
351 356parallel
Strand 3
A
417 422parallel
Strand 4
A
31 36parallel
Strand 5
A
461 466parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
490 493anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
263 264parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
167 174parallel
Strand 5
A
134 140parallel
Strand 6
A
277 280parallel
Strand 7
A
314 317parallel
Strand 8
A
328 329parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
536 538anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 383first strand
Strand 2
B
351 356parallel
Strand 3
B
417 422parallel
Strand 4
B
30 36parallel
Strand 5
B
460 466parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
490 493anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
263 264parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
167 174parallel
Strand 5
B
134 140parallel
Strand 6
B
277 280parallel
Strand 7
B
314 317parallel
Strand 8
B
328 329parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 501first strand
Strand 2
B
536 538anti-parallel
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