Analysis of interatomic Contacts of Structural Units in PDB entry:
5KGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KGN entry

There are 4 chains in PDB entry 5KGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20HIS 549
B
 MET 19ILE 539
C
 ASP 2TYR 11
D
 ASP 2TYR 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 5KGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
72 77Right-handed 310
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
118 131Right-handed alpha
Helix 9
AA9
A
149 163Right-handed alpha
Helix 10
AB1
A
183 198Right-handed alpha
Helix 11
AB2
A
210 214Right-handed alpha
Helix 12
AB3
A
219 233Right-handed alpha
Helix 13
AB4
A
242 253Right-handed alpha
Helix 14
AB5
A
256 260Right-handed 310
Helix 15
AB6
A
266 271Right-handed 310
Helix 16
AB7
A
288 297Right-handed alpha
Helix 17
AB8
A
299 304Right-handed alpha
Helix 18
AB9
A
339 347Right-handed alpha
Helix 19
AC1
A
359 364Right-handed alpha
Helix 20
AC2
A
390 394Right-handed 310
Helix 21
AC3
A
398 413Right-handed alpha
Helix 22
AC4
A
423 430Right-handed alpha
Helix 23
AC5
A
433 459Right-handed alpha
Helix 24
AC6
A
510 512Right-handed 310
Helix 25
AC7
A
513 523Right-handed alpha
Helix 26
AC8
A
539 549Right-handed alpha
Helix 27
AC9
B
23 27Right-handed 310
Helix 28
AD1
B
48 53Right-handed alpha
Helix 29
AD2
B
55 62Right-handed alpha
Helix 30
AD3
B
72 77Right-handed 310
Helix 31
AD4
B
85 96Right-handed alpha
Helix 32
AD5
B
101 112Right-handed alpha
Helix 33
AD6
B
114 117Right-handed 310
Helix 34
AD7
B
118 131Right-handed alpha
Helix 35
AD8
B
149 163Right-handed alpha
Helix 36
AD9
B
183 198Right-handed alpha
Helix 37
AE1
B
210 214Right-handed alpha
Helix 38
AE2
B
219 233Right-handed alpha
Helix 39
AE3
B
242 253Right-handed alpha
Helix 40
AE4
B
256 260Right-handed 310
Helix 41
AE5
B
266 271Right-handed 310
Helix 42
AE6
B
288 297Right-handed alpha
Helix 43
AE7
B
299 304Right-handed alpha
Helix 44
AE8
B
339 347Right-handed alpha
Helix 45
AE9
B
359 364Right-handed alpha
Helix 46
AF1
B
390 394Right-handed 310
Helix 47
AF2
B
398 413Right-handed alpha
Helix 48
AF3
B
423 430Right-handed alpha
Helix 49
AF4
B
433 459Right-handed alpha
Helix 50
AF5
B
510 512Right-handed 310
Helix 51
AF6
B
513 523Right-handed alpha
Helix 52
AF7
C
6 11Right-handed 310
Helix 53
AF8
D
6 11Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5KGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 383first strand
Strand 2
A
351 356parallel
Strand 3
A
417 422parallel
Strand 4
A
30 36parallel
Strand 5
A
460 466parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
490 493anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
263 264parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
167 174parallel
Strand 5
A
134 140parallel
Strand 6
A
277 280parallel
Strand 7
A
314 317parallel
Strand 8
A
328 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
536 538anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 383first strand
Strand 2
B
351 356parallel
Strand 3
B
417 422parallel
Strand 4
B
30 36parallel
Strand 5
B
460 466parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
490 493anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
263 264parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
167 174parallel
Strand 5
B
134 140parallel
Strand 6
B
277 280parallel
Strand 7
B
314 317parallel
Strand 8
B
328 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 501first strand
Strand 2
B
536 538anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il