Analysis of interatomic Contacts of Structural Units in PDB entry:
5KH0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KH0 entry

There are 4 chains in PDB entry 5KH0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 7MET 395
B
 ARG 8MET 395
C
 ARG 8MET 395
D
 ARG 8MET 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5KH0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
81 86Right-handed alpha
Helix 3
AA3
A
100 113Right-handed alpha
Helix 4
AA4
A
130 135Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
156 165Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
200 213Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
224 232Right-handed alpha
Helix 12
AB3
A
245 253Right-handed alpha
Helix 13
AB4
A
262 271Right-handed alpha
Helix 14
AB5
A
272 281Right-handed alpha
Helix 15
AB6
A
282 286Right-handed 310
Helix 16
AB7
A
310 321Right-handed alpha
Helix 17
AB8
A
336 340Right-handed 310
Helix 18
AB9
A
355 370Right-handed alpha
Helix 19
AC1
A
376 384Right-handed alpha
Helix 20
AC2
A
386 392Right-handed alpha
Helix 21
AC3
B
20 30Right-handed alpha
Helix 22
AC4
B
81 86Right-handed alpha
Helix 23
AC5
B
100 113Right-handed alpha
Helix 24
AC6
B
130 135Right-handed alpha
Helix 25
AC7
B
136 140Right-handed 310
Helix 26
AC8
B
153 155Right-handed 310
Helix 27
AC9
B
156 165Right-handed alpha
Helix 28
AD1
B
174 179Right-handed alpha
Helix 29
AD2
B
200 213Right-handed alpha
Helix 30
AD3
B
221 223Right-handed 310
Helix 31
AD4
B
224 232Right-handed alpha
Helix 32
AD5
B
245 253Right-handed alpha
Helix 33
AD6
B
262 271Right-handed alpha
Helix 34
AD7
B
272 281Right-handed alpha
Helix 35
AD8
B
282 286Right-handed 310
Helix 36
AD9
B
310 321Right-handed alpha
Helix 37
AE1
B
336 340Right-handed 310
Helix 38
AE2
B
355 370Right-handed alpha
Helix 39
AE3
B
376 384Right-handed alpha
Helix 40
AE4
B
386 392Right-handed alpha
Helix 41
AE5
C
20 30Right-handed alpha
Helix 42
AE6
C
81 86Right-handed alpha
Helix 43
AE7
C
100 113Right-handed alpha
Helix 44
AE8
C
130 135Right-handed alpha
Helix 45
AE9
C
136 140Right-handed 310
Helix 46
AF1
C
153 155Right-handed 310
Helix 47
AF2
C
156 165Right-handed alpha
Helix 48
AF3
C
200 213Right-handed alpha
Helix 49
AF4
C
221 223Right-handed 310
Helix 50
AF5
C
224 232Right-handed alpha
Helix 51
AF6
C
245 253Right-handed alpha
Helix 52
AF7
C
262 271Right-handed alpha
Helix 53
AF8
C
272 281Right-handed alpha
Helix 54
AF9
C
282 286Right-handed 310
Helix 55
AG1
C
310 321Right-handed alpha
Helix 56
AG2
C
336 340Right-handed 310
Helix 57
AG3
C
355 370Right-handed alpha
Helix 58
AG4
C
376 384Right-handed alpha
Helix 59
AG5
C
386 392Right-handed alpha
Helix 60
AG6
D
20 30Right-handed alpha
Helix 61
AG7
D
79 86Right-handed alpha
Helix 62
AG8
D
100 113Right-handed alpha
Helix 63
AG9
D
130 135Right-handed alpha
Helix 64
AH1
D
153 155Right-handed 310
Helix 65
AH2
D
156 165Right-handed alpha
Helix 66
AH3
D
174 179Right-handed alpha
Helix 67
AH4
D
200 213Right-handed alpha
Helix 68
AH5
D
221 223Right-handed 310
Helix 69
AH6
D
224 232Right-handed alpha
Helix 70
AH7
D
245 253Right-handed alpha
Helix 71
AH8
D
262 271Right-handed alpha
Helix 72
AH9
D
272 281Right-handed alpha
Helix 73
AI1
D
282 286Right-handed 310
Helix 74
AI2
D
310 321Right-handed alpha
Helix 75
AI3
D
336 340Right-handed 310
Helix 76
AI4
D
355 370Right-handed alpha
Helix 77
AI5
D
376 384Right-handed alpha
Helix 78
AI6
D
386 392Right-handed alpha
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There are 10 sheets in PDB entry 5KH0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
9 15parallel
Strand 4
A
90 95parallel
Strand 5
A
117 121parallel
Strand 6
A
143 145parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
236 241parallel
Strand 3
A
184 188parallel
Strand 4
A
216 219parallel
Strand 5
B
216 219anti-parallel
Strand 6
B
184 188parallel
Strand 7
B
236 241parallel
Strand 8
B
258 261parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 330first strand
Strand 2
A
291 296parallel
Strand 3
A
343 348parallel
Strand 4
A
373 375parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
9 15parallel
Strand 4
B
90 95parallel
Strand 5
B
117 121parallel
Strand 6
B
143 145parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 330first strand
Strand 2
B
291 296parallel
Strand 3
B
343 348parallel
Strand 4
B
373 375parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
58 62anti-parallel
Strand 3
C
9 15parallel
Strand 4
C
90 95parallel
Strand 5
C
117 121parallel
Strand 6
C
143 145parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 261first strand
Strand 2
C
236 241parallel
Strand 3
C
184 188parallel
Strand 4
C
216 219parallel
Strand 5
D
216 219anti-parallel
Strand 6
D
184 188parallel
Strand 7
D
236 241parallel
Strand 8
D
258 261parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 330first strand
Strand 2
C
291 296parallel
Strand 3
C
345 348parallel
Strand 4
C
373 375parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 52first strand
Strand 2
D
58 62anti-parallel
Strand 3
D
9 15parallel
Strand 4
D
90 95parallel
Strand 5
D
117 121parallel
Strand 6
D
143 145parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 330first strand
Strand 2
D
291 296parallel
Strand 3
D
345 348parallel
Strand 4
D
373 375parallel
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