Analysis of interatomic Contacts of Structural Units in PDB entry:
5KH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KH1 entry

There is 1 chain in PDB entry 5KH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22GLU 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5KH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
236 241Right-handed 310
Helix 4
AA4
A
255 267Right-handed alpha
Helix 5
AA5
A
320 336Right-handed alpha
Helix 6
AA6
A
346 357Right-handed alpha
Helix 7
AA7
A
359 370Right-handed alpha
Helix 8
AA8
A
380 397Right-handed alpha
Helix 9
AA9
A
403 428Right-handed alpha
Helix 10
AB1
A
435 451Right-handed alpha
Helix 11
AB2
A
469 495Right-handed alpha
Helix 12
AB3
A
495 506Right-handed alpha
Helix 13
AB4
A
506 523Right-handed alpha
Helix 14
AB5
A
524 535Right-handed alpha
Helix 15
AB6
A
543 569Right-handed alpha
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There are 3 sheets in PDB entry 5KH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
83 85parallel
Strand 3
A
103 105parallel
Strand 4
A
124 125parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
163 165parallel
Strand 3
A
183 185parallel
Strand 4
A
203 206parallel
Strand 5
A
223 226parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
276 277parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il