Analysis of interatomic Contacts of Structural Units in PDB entry:
5KH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KH2 entry

There are 4 chains in PDB entry 5KH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18HIS 246
B
 THR 17HIS 246
C
 GLN 18ARG 248
D
 GLN 18HIS 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5KH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 37Right-handed alpha
Helix 2
AA2
A
40 63Right-handed alpha
Helix 3
AA3
A
80 98Right-handed alpha
Helix 4
AA4
A
98 105Right-handed alpha
Helix 5
AA5
A
119 134Right-handed alpha
Helix 6
AA6
A
148 166Right-handed alpha
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
175 183Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
231 246Right-handed alpha
Helix 12
AB3
B
29 37Right-handed alpha
Helix 13
AB4
B
40 63Right-handed alpha
Helix 14
AB5
B
81 89Right-handed alpha
Helix 15
AB6
B
89 98Right-handed alpha
Helix 16
AB7
B
98 105Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
119 134Right-handed alpha
Helix 19
AC1
B
148 166Right-handed alpha
Helix 20
AC2
B
170 174Right-handed 310
Helix 21
AC3
B
175 183Right-handed alpha
Helix 22
AC4
B
184 188Right-handed 310
Helix 23
AC5
B
189 193Right-handed 310
Helix 24
AC6
B
226 230Right-handed 310
Helix 25
AC7
B
231 246Right-handed alpha
Helix 26
AC8
C
29 37Right-handed alpha
Helix 27
AC9
C
40 63Right-handed alpha
Helix 28
AD1
C
81 98Right-handed alpha
Helix 29
AD2
C
98 105Right-handed alpha
Helix 30
AD3
C
119 134Right-handed alpha
Helix 31
AD4
C
148 166Right-handed alpha
Helix 32
AD5
C
170 174Right-handed 310
Helix 33
AD6
C
175 183Right-handed alpha
Helix 34
AD7
C
184 188Right-handed 310
Helix 35
AD8
C
189 193Right-handed 310
Helix 36
AD9
C
226 230Right-handed 310
Helix 37
AE1
C
231 244Right-handed alpha
Helix 38
AE2
D
29 37Right-handed alpha
Helix 39
AE3
D
40 63Right-handed alpha
Helix 40
AE4
D
89 98Right-handed alpha
Helix 41
AE5
D
98 105Right-handed alpha
Helix 42
AE6
D
114 118Right-handed 310
Helix 43
AE7
D
119 134Right-handed alpha
Helix 44
AE8
D
148 166Right-handed alpha
Helix 45
AE9
D
170 174Right-handed 310
Helix 46
AF1
D
175 183Right-handed alpha
Helix 47
AF2
D
184 188Right-handed 310
Helix 48
AF3
D
189 193Right-handed 310
Helix 49
AF4
D
226 230Right-handed 310
Helix 50
AF5
D
231 246Right-handed alpha
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There are 4 sheets in PDB entry 5KH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
140 144parallel
Strand 3
A
66 71parallel
Strand 4
A
22 27parallel
Strand 5
A
197 200parallel
Strand 6
A
219 222parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
140 144parallel
Strand 3
B
66 71parallel
Strand 4
B
22 27parallel
Strand 5
B
197 200parallel
Strand 6
B
219 222parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 112first strand
Strand 2
C
140 144parallel
Strand 3
C
66 71parallel
Strand 4
C
22 27parallel
Strand 5
C
197 200parallel
Strand 6
C
219 222parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 112first strand
Strand 2
D
140 144parallel
Strand 3
D
66 71parallel
Strand 4
D
22 27parallel
Strand 5
D
197 200parallel
Strand 6
D
219 222parallel
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