Analysis of interatomic Contacts of Structural Units in PDB entry:
5KH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KH5 entry

There are 2 chains in PDB entry 5KH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17ARG 248
B
 THR 17HIS 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5KH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 37Right-handed alpha
Helix 2
AA2
A
40 63Right-handed alpha
Helix 3
AA3
A
80 87Right-handed alpha
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
98 105Right-handed alpha
Helix 6
AA6
A
119 134Right-handed alpha
Helix 7
AA7
A
148 166Right-handed alpha
Helix 8
AA8
A
170 174Right-handed 310
Helix 9
AA9
A
175 183Right-handed alpha
Helix 10
AB1
A
184 188Right-handed 310
Helix 11
AB2
A
189 193Right-handed 310
Helix 12
AB3
A
226 230Right-handed 310
Helix 13
AB4
A
231 248Right-handed alpha
Helix 14
AB5
B
29 37Right-handed alpha
Helix 15
AB6
B
40 63Right-handed alpha
Helix 16
AB7
B
80 89Right-handed alpha
Helix 17
AB8
B
89 98Right-handed alpha
Helix 18
AB9
B
98 105Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
119 134Right-handed alpha
Helix 21
AC3
B
148 166Right-handed alpha
Helix 22
AC4
B
170 174Right-handed 310
Helix 23
AC5
B
175 183Right-handed alpha
Helix 24
AC6
B
184 188Right-handed 310
Helix 25
AC7
B
189 193Right-handed 310
Helix 26
AC8
B
226 230Right-handed 310
Helix 27
AC9
B
231 245Right-handed alpha
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There are 2 sheets in PDB entry 5KH5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
140 144parallel
Strand 3
A
66 70parallel
Strand 4
A
22 26parallel
Strand 5
A
197 200parallel
Strand 6
A
219 222parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
140 144parallel
Strand 3
B
66 71parallel
Strand 4
B
22 27parallel
Strand 5
B
197 200parallel
Strand 6
B
219 222parallel
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