Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHA entry

There are 2 chains in PDB entry 5KHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASP 541
B
 MET 1ASP 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5KHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 35Right-handed alpha
Helix 2
AA2
A
52 58Right-handed 310
Helix 3
AA3
A
60 73Right-handed alpha
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
148 151Right-handed 310
Helix 6
AA6
A
152 162Right-handed alpha
Helix 7
AA7
A
178 195Right-handed alpha
Helix 8
AA8
A
258 278Right-handed alpha
Helix 9
AA9
A
290 305Right-handed alpha
Helix 10
AB1
A
320 335Right-handed alpha
Helix 11
AB2
A
343 359Right-handed alpha
Helix 12
AB3
A
364 387Right-handed alpha
Helix 13
AB4
A
395 402Right-handed alpha
Helix 14
AB5
A
421 434Right-handed alpha
Helix 15
AB6
A
442 447Right-handed alpha
Helix 16
AB7
A
466 478Right-handed alpha
Helix 17
AB8
A
483 489Right-handed alpha
Helix 18
AB9
A
493 507Right-handed alpha
Helix 19
AC1
A
507 514Right-handed alpha
Helix 20
AC2
B
17 35Right-handed alpha
Helix 21
AC3
B
52 59Right-handed 310
Helix 22
AC4
B
60 73Right-handed alpha
Helix 23
AC5
B
121 125Right-handed 310
Helix 24
AC6
B
148 151Right-handed 310
Helix 25
AC7
B
152 161Right-handed alpha
Helix 26
AC8
B
178 195Right-handed alpha
Helix 27
AC9
B
258 278Right-handed alpha
Helix 28
AD1
B
290 305Right-handed alpha
Helix 29
AD2
B
320 335Right-handed alpha
Helix 30
AD3
B
343 359Right-handed alpha
Helix 31
AD4
B
364 387Right-handed alpha
Helix 32
AD5
B
395 402Right-handed alpha
Helix 33
AD6
B
421 434Right-handed alpha
Helix 34
AD7
B
442 447Right-handed alpha
Helix 35
AD8
B
466 478Right-handed alpha
Helix 36
AD9
B
483 490Right-handed alpha
Helix 37
AE1
B
493 507Right-handed alpha
Helix 38
AE2
B
507 514Right-handed alpha
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There are 8 sheets in PDB entry 5KHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 110first strand
Strand 2
A
93 101anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
39 41parallel
Strand 5
A
4 10parallel
Strand 6
A
235 242anti-parallel
Strand 7
A
247 248anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
166 171parallel
Strand 4
A
197 202parallel
Strand 5
A
217 219anti-parallel
Strand 6
A
225 228anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
210 213anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
309 313parallel
Strand 3
A
283 286parallel
Strand 4
A
389 392parallel
Strand 5
A
414 415parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 110first strand
Strand 2
B
93 101anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
39 41parallel
Strand 5
B
4 10parallel
Strand 6
B
235 242anti-parallel
Strand 7
B
247 248anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
140 146anti-parallel
Strand 3
B
166 171parallel
Strand 4
B
197 202parallel
Strand 5
B
217 219anti-parallel
Strand 6
B
225 228anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
210 213anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
309 313parallel
Strand 3
B
283 286parallel
Strand 4
B
389 392parallel
Strand 5
B
414 415parallel
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