Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHC entry

There is 1 chain in PDB entry 5KHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1THR 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5KHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 76Right-handed alpha
Helix 2
AA2
A
98 102Right-handed 310
Helix 3
AA3
A
106 113Right-handed alpha
Helix 4
AA4
A
150 154Right-handed 310
Helix 5
AA5
A
232 236Right-handed 310
Helix 6
AA6
A
262 267Right-handed 310
Helix 7
AA7
A
295 299Right-handed 310
Helix 8
AA8
A
302 311Right-handed alpha
Helix 9
AA9
A
414 420Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5KHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
322 327anti-parallel
Strand 3
A
190 195anti-parallel
Strand 4
A
184 187anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
21 39anti-parallel
Strand 3
A
155 171anti-parallel
Strand 4
A
203 208anti-parallel
Strand 5
A
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
155 171anti-parallel
Strand 3
A
21 39anti-parallel
Strand 4
A
237 239anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 50first strand
Strand 2
A
139 147anti-parallel
Strand 3
A
78 88anti-parallel
Strand 4
A
118 121parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
273 279parallel
Strand 3
A
288 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 389first strand
Strand 2
A
356 362anti-parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
409 413parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
405 407anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il